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[177897_at]

Description K03H1.7 /REP_DB=WormBase Gene ID /WP=CE00573 /TR=Q21196 /GB=CAA82659.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 07      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 40.4
(-3)
A 		69
(-0.5)
A 		67
(-0.7)
A 		108.9
(3)
A 		69
B 64.5
(2.4)
A 		10.8
(-3)
A 		71
(3)
A 		67.6
(2.7)
A 		60
C 55
(3)
A 		30.8
(-0.1)
A 		50.1
(2.4)
A 		7.7
(-3)
A 		47
avr 53.3
(0.8) 		36.9
(-3) 		62.7
(3) 		61.4
(2.7) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 43.6
(-2.5)
A 		34.5
(-3)
A 		39
(-2.8)
A 		46
(-2.4)
A 		147.3
(3)
P 		141.1
(2.7)
P 		113
B 47.6
(-1.8)
A 		45.7
(-1.9)
A 		17.5
(-3)
A 		51.4
(-1.7)
A 		148
(2.2)
P 		168.3
(3)
P 		151
C 74
(-0.7)
A 		50
(-1.6)
A 		10.2
(-3)
A 		32.4
(-2.2)
A 		180.1
(3)
P 		126.1
(1.1)
P 		170
avr 55.1
(-1.6) 		43.4
(-2.1) 		22.2
(-3) 		43.3
(-2.1) 		158.5
(3) 		145.2
(2.4) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14.7
(-3)
A 		15
(-2.4)
A 		17.5
(3)
A 		15.9
(-0.4)
A 		3
B 20.6
(3)
A 		2.7
(-3)
A 		16.5
(1.6)
A 		14.4
(0.9)
A 		18
C 18.2
(3)
A 		8.9
(-0.3)
A 		17.4
(2.7)
A 		1.3
(-3)
A 		17
avr 17.8
(3) 		8.9
(-3) 		17.1
(2.5) 		10.5
(-1.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 8
(-3)
A 		12.3
(-2.3)
A 		8.5
(-2.9)
A 		11.7
(-2.4)
A 		44.5
(3)
P 		34.3
(1.3)
P 		37
B 16.6
(-1.7)
A 		15.2
(-1.9)
A 		4.2
(-3)
A 		13.6
(-2)
A 		60.1
(2.7)
P 		62.8
(3)
P 		59
C 27.4
(-0.3)
A 		15.2
(-1.6)
A 		2.6
(-3)
A 		6.5
(-2.6)
A 		58.3
(3)
P 		42.2
(1.3)
P 		56
avr 17.3
(-1.5) 		14.2
(-1.9) 		5.1
(-3) 		10.6
(-2.3) 		54.3
(3) 		46.4
(2) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6339
Sequence Type Exemplar sequence
Representative Public ID K03H1.7 NCBI
Target Description K03H1.7 /REP_DB=WormBase Gene ID /WP=CE00573 /TR=Q21196 /GB=CAA82659.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066809(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066809 NCBI Caenorhabditis elegans K03H1.7 (K03H1.7) mRNA, complete cds. 11/11 None
SNAP00000019348 ENSEMBL cdna:SNAP chromosome:CEL140:III:9947324:9948271:1 11/11 None
GENEFINDER00000019357 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9947324:9947754:1 11/11 None
K03H1.7 ENSEMBL cdna:known chromosome:CEL140:III:9947302:9947997:1 gene:K03H1.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9947319-9947689(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H1.7
Entrez Gene 176408 Entrez gene
SwissProt Q21196 EMBL-EBI
WormBase CE00573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82659 Hypothetical protein K03H1.7 [Caenorhabditis elegans] ref|NP_499210.1| K03H1.7 [Caenorhabditis elegans] 3.0E-33
blast CAA82659 Hypothetical protein K03H1.7 [Caenorhabditis elegans] ref|NP_499210.1| K03H1.7 [Caenorhabditis elegans] 5.0E-32
blast CAE65081 Hypothetical protein CBG09939 [Caenorhabditis briggsae] 2.0E-12
blast CAE65081 Hypothetical protein CBG09939 [Caenorhabditis briggsae] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:177897_AT
ttctcttcctcgttcaatgcaaagcaaacgtcttcatcaactccacaaaagtcgacaaag
acaccgacgtgctctgaccctcgttcacccagccaggatatcgagagaactccaattcaa
gtcaagacagttgagaatgacgaaaacggatcctcggaaagttcaacaacgaaagccgat
aagccacggaagacaagcttgagacaaaagatgttcgctaggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCTTCCTCGTTCAATGCAAAGC 130 691 25 Antisense
GCAAAGCAAACGTCTTCATCAACTC 489 317 43 Antisense
CATCAACTCCACAAAAGTCGACAAA 503 213 59 Antisense
ACAAAGACACCGACGTGCTCTGACC 430 111 79 Antisense
CGTTCACCCAGCCAGGATATCGAGA 332 247 106 Antisense
GAGAACTCCAATTCAAGTCAAGACA 172 393 129 Antisense
GAATGACGAAAACGGATCCTCGGAA 557 329 159 Antisense
GGAAAGTTCAACAACGAAAGCCGAT 485 525 180 Antisense
GAAAGCCGATAAGCCACGGAAGACA 162 345 195 Antisense
GCCACGGAAGACAAGCTTGAGACAA 649 277 207 Antisense
GAGACAAAAGATGTTCGCTAGGAAG 539 391 225 Antisense
Sequence Source Affymetrix Proprietary Database