[Home] | [Total List]

[177896_at]

Description C09F9.1 /REP_DB=WormBase Gene ID /WP=CE17392 /TR=O62058 /GB=CAB03865.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 29.4
(-3)
A 		45.7
(-1.8)
A 		31.4
(-2.8)
A 		109
(3)
A 		80
B 45.6
(1.6)
A 		39.6
(-3)
A 		47.5
(3)
A 		40.9
(-2)
A 		8
C 32.5
(-3)
A 		74.3
(0.2)
A 		54
(-1.4)
A 		111.9
(3)
A 		79
avr 35.8
(-3) 		53.2
(-1) 		44.3
(-2) 		87.3
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 70.6
(-0.5)
A 		23.2
(-3)
A 		40.3
(-2.1)
A 		45.1
(-1.9)
A 		137.7
(3)
M 		118.7
(2)
P 		115
B 33.7
(-1.9)
A 		47.3
(-1.3)
A 		9
(-3)
A 		27.3
(-2.2)
A 		110.1
(1.6)
M 		140.6
(3)
M 		132
C 35.4
(-3)
A 		67.9
(-1.3)
A 		59.8
(-1.7)
A 		93.9
(0.1)
A 		91.7
(-0)
A 		149.5
(3)
P 		114
avr 46.6
(-2.4) 		46.1
(-2.4) 		36.4
(-3) 		55.4
(-1.9) 		113.2
(1.6) 		136.3
(3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.7
(-1.1)
A 		9.9
(-1.7)
A 		8.2
(-3)
A 		16
(3)
A 		8
B 14.5
(3)
A 		9.8
(-1.9)
A 		11
(-0.6)
A 		8.7
(-3)
A 		6
C 10.8
(-3)
A 		21.4
(3)
A 		18.8
(1.5)
A 		18.9
(1.6)
A 		11
avr 12
(-3) 		13.7
(1.1) 		12.7
(-1.3) 		14.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 13
(-2.2)
A 		8.3
(-3)
A 		8.8
(-2.9)
A 		11.4
(-2.4)
A 		41.6
(3)
M 		28.9
(0.7)
P 		33
B 11.7
(-1.9)
A 		15.7
(-1.4)
A 		2.2
(-3)
A 		7.2
(-2.4)
A 		44.7
(2.1)
M 		52.4
(3)
M 		50
C 13.1
(-3)
A 		20.7
(-1.8)
A 		15.2
(-2.7)
A 		18.9
(-2.1)
A 		29.7
(-0.3)
A 		50.1
(3)
P 		37
avr 12.6
(-2.3) 		14.9
(-1.9) 		8.7
(-3) 		12.5
(-2.4) 		38.7
(2.1) 		43.8
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3126
Sequence Type Exemplar sequence
Representative Public ID C09F9.1 NCBI
Target Description C09F9.1 /REP_DB=WormBase Gene ID /WP=CE17392 /TR=O62058 /GB=CAB03865.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064651 NCBI Caenorhabditis elegans C09F9.1 (C09F9.1) mRNA, complete cds. 11/11 None
SNAP00000033572 ENSEMBL cdna:SNAP chromosome:CEL140:II:14698717:14699202:1 11/11 None
GENEFINDER00000033584 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14698436:14699202:1 11/11 None
C09F9.1 ENSEMBL cdna:known chromosome:CEL140:II:14698717:14699202:1 gene:C09F9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14698713-14699199(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09F9.1
Entrez Gene 182455 Entrez gene
SwissProt O62058 EMBL-EBI
WormBase CE17392 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03865 Hypothetical protein C09F9.1 [Caenorhabditis elegans] ref|NP_497052.1| C09F9.1 [Caenorhabditis elegans] 3.0E-70
blast CAB03865 Hypothetical protein C09F9.1 [Caenorhabditis elegans] ref|NP_497052.1| C09F9.1 [Caenorhabditis elegans] 7.0E-70
blast AAB09154 Hypothetical protein F38A5.8 [Caenorhabditis elegans] ref|NP_501014.1| F38A5.8 [Caenorhabditis elegans] 4.0E-30
blast AAB09154 Hypothetical protein F38A5.8 [Caenorhabditis elegans] ref|NP_501014.1| F38A5.8 [Caenorhabditis elegans] 9.0E-30
blast CAE60623 Hypothetical protein CBG04266 [Caenorhabditis briggsae] emb|CAE56234.1| Hypothetical protein CBG23869 [Caenorhabditis briggsae] 7.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497052.1 1 91-113
C09F9.1 1 91-113
SNAP00000033572 1 91-113
GENEFINDER00000033584 1 146-168
Sequence
Target Sequence 
>C. ELEGANS:177896_AT
cggtgaatacgaggtgcttggccccgcgaaatcggcacctcctatggcgtcgaacaacaa
cagaagctcgtctacaccgaagcccgcgaagattcttgtggctcctccattggctccgcc
attgaagcacatcccaaaagtggagaaggaggaagattctggagcaagtgtgatggagac
gaagagatgtgaccagagcaacatggagagcgcctaccacgacatcgtctcaatcaagaa
cagaccaaactcgtgtgatacgtgccacgtggcaagtctcgtgttcctgatcgttctggt
gattgccatctcgacaccagttctcctctctgcgaataatggcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTGAATACGAGGTGCTTGGCCCC 13 243 21 Antisense
ACCTCCTATGGCGTCGAACAACAAC 78 89 57 Antisense
AACAGAAGCTCGTCTACACCGAAGC 594 133 79 Antisense
AGCCCGCGAAGATTCTTGTGGCTCC 115 83 101 Antisense
CTCCATTGGCTCCGCCATTGAAGCA 623 235 125 Antisense
CAGAGCAACATGGAGAGCGCCTACC 486 205 214 Antisense
ACGACATCGTCTCAATCAAGAACAG 664 91 239 Antisense
ACTCGTGTGATACGTGCCACGTGGC 440 97 269 Antisense
CCACGTGGCAAGTCTCGTGTTCCTG 321 275 285 Antisense
GTTCTGGTGATTGCCATCTCGACAC 135 443 313 Antisense
TTCTCCTCTCTGCGAATAATGGCGG 185 691 341 Antisense
Sequence Source Affymetrix Proprietary Database