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[177895_at]

Description Y7A5A.3 /REP_DB=WormBase Gene ID /WP=CE21328 /TR=Q9XVZ0 /GB=CAA22464.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 02      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 4.6
(-2.6)
A 		5.6
(-2.5)
A 		1.6
(-3)
A 		50.9
(3)
M 		49
B 2.4
(-2.9)
A 		3.9
(-2.6)
A 		1.5
(-3)
A 		40.9
(3)
P 		39
C 5.7
(-1.7)
A 		0.8
(-3)
A 		1.7
(-2.8)
A 		23.9
(3)
A 		23
avr 4.2
(-2.6) 		3.4
(-2.7) 		1.6
(-3) 		38.6
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 71.9
(3)
P 		17.5
(-1.6)
A 		3.6
(-2.8)
A 		1.6
(-3)
A 		7.6
(-2.5)
A 		1.8
(-3)
A 		70
B 13.1
(-1)
A 		7.3
(-2)
A 		2.1
(-2.8)
A 		37.3
(3)
A 		4.5
(-2.4)
A 		1.1
(-3)
A 		36
C 11.9
(1)
A 		8.7
(-0.4)
A 		16.5
(3)
A 		2.8
(-3)
A 		9.3
(-0.2)
A 		11.6
(0.9)
A 		14
avr 32.3
(3) 		11.2
(-1.6) 		7.4
(-2.4) 		13.9
(-1) 		7.1
(-2.5) 		4.8
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.7
(-1.9)
A 		1.2
(-2.3)
A 		0.4
(-3)
A 		7.5
(3)
M 		7
B 0.8
(-2.7)
A 		1
(-2.6)
A 		0.4
(-3)
A 		8.7
(3)
P 		8
C 1.9
(-0.3)
A 		0.2
(-3)
A 		0.6
(-2.4)
A 		4
(3)
A 		4
avr 1.5
(-2) 		0.8
(-2.7) 		0.5
(-3) 		6.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 13.2
(3)
P 		6.2
(-0.3)
A 		0.8
(-2.8)
A 		0.4
(-3)
A 		2.3
(-2.1)
A 		0.4
(-3)
A 		13
B 4.5
(-0.4)
A 		2.4
(-1.7)
A 		0.5
(-2.9)
A 		9.9
(3)
A 		1.8
(-2.1)
A 		0.4
(-3)
A 		10
C 4.4
(3)
A 		2.7
(0.3)
A 		4.2
(2.7)
A 		0.6
(-3)
A 		3
(0.8)
A 		3.9
(2.2)
A 		4
avr 7.4
(3) 		3.8
(-0.7) 		1.8
(-2.8) 		3.6
(-0.9) 		2.4
(-2.2) 		1.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17590
Sequence Type Exemplar sequence
Representative Public ID Y7A5A.3 NCBI
Target Description Y7A5A.3 /REP_DB=WormBase Gene ID /WP=CE21328 /TR=Q9XVZ0 /GB=CAA22464.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078196 NCBI Caenorhabditis elegans Y7A5A.3 (Y7A5A.3) mRNA, complete cds. 11/11 None
Y7A5A.3 ENSEMBL cdna:known chromosome:CEL140:X:15783865:15784588:-1 gene:Y7A5A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028079 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15783864-15784588(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y7A5A.3
Entrez Gene 189382 Entrez gene
SwissProt Q9XVZ0 EMBL-EBI
WormBase CE38664 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22464 Hypothetical protein Y7A5A.3 [Caenorhabditis elegans] ref|NP_510597.2| Y7A5A.3 [Caenorhabditis elegans] 1.0E-157
blast T27435 hypothetical protein Y7A5A.4 - Caenorhabditis elegans 1.0E-83
blast T27436 hypothetical protein Y7A5A.3 - Caenorhabditis elegans 1.0E-69
blast CAA22464 Hypothetical protein Y7A5A.3 [Caenorhabditis elegans] ref|NP_510597.2| Y7A5A.3 [Caenorhabditis elegans] 6.0E-67
blast T27436 hypothetical protein Y7A5A.3 - Caenorhabditis elegans 4.0E-66
blast CAA22104 Hypothetical protein Y75B8A.19 [Caenorhabditis elegans] ref|NP_499591.1| Y75B8A.19 [Caenorhabditis elegans] 4.0E-19
Sequence
Target Sequence 
>C. ELEGANS:177895_AT
gatcgaatcggtgcatatatctatgatactcacttggacatattaaaagttactgacaaa
cgtggggaccatttgaagaatacaaccacaaaaaccaacgtcgagatattcgtgaatgat
gagcctgtcagagataaattgtacatcttcaaagcagaattctttgctgcattctatgcg
agaaagcaacccagatttctccgtgttacaaaatgttctcaaactggcaatgcaaaatat
ataatagaagaaattgacaaagttaggaccaattttcagtggagctccttgaagtggatt
aattcatcattcaaaagcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGAATCGGTGCATATATCTATG 612 417 52 Antisense
TATCTATGATACTCACTTGGACATA 23 659 69 Antisense
GTTACTGACAAACGTGGGGACCATT 36 447 100 Antisense
TACAACCACAAAAACCAACGTCGAG 375 273 132 Antisense
GATATTCGTGAATGATGAGCCTGTC 256 427 156 Antisense
AGAAAGCAACCCAGATTTCTCCGTG 81 73 232 Antisense
TTCTCCGTGTTACAAAATGTTCTCA 395 691 248 Antisense
ATGTTCTCAAACTGGCAATGCAAAA 129 45 264 Antisense
GGACCAATTTTCAGTGGAGCTCCTT 112 521 317 Antisense
GTGGAGCTCCTTGAAGTGGATTAAT 142 491 330 Antisense
GGATTAATTCATCATTCAAAAGCGC 14 507 347 Antisense
Sequence Source Affymetrix Proprietary Database