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[177894_at]

Description C01A2.4 /REP_DB=WormBase Gene ID /WP=CE07786 /TR=O02208 /GB=CAB02699.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 50      6grp_total > 38      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 459
1 2 3 4 range
A 520.1
(0.2)
P 		370
(-2.2)
P 		315.1
(-3)
P 		705.2
(3)
P 		390
B 549.8
(1)
P 		302.9
(-3)
P 		354.5
(-2.2)
P 		674.5
(3)
P 		372
C 637.6
(1.1)
P 		383.2
(-2.7)
P 		364
(-3)
P 		761.6
(3)
P 		398
avr 569.2
(0.7) 		352
(-2.9) 		344.5
(-3) 		713.8
(3) 		369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 532
1 2 3 4 5 6 range
A 746.9
(3)
P 		674.4
(1.9)
P 		458.1
(-1.3)
P 		344.7
(-3)
P 		391.9
(-2.3)
P 		630.3
(1.3)
P 		402
B 845.2
(3)
P 		523.1
(-1)
P 		552.6
(-0.6)
P 		363.9
(-3)
P 		581.4
(-0.3)
P 		661
(0.7)
P 		481
C 787.9
(3)
P 		495.4
(-0.7)
P 		313.5
(-3)
P 		368.6
(-2.3)
P 		413
(-1.7)
P 		743.8
(2.4)
P 		474
avr 793.3
(3) 		564.3
(-0.2) 		441.4
(-1.9) 		359.1
(-3) 		462.1
(-1.6) 		678.4
(1.4) 		434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 189.4
(3)
P 		80.3
(-3)
P 		82.4
(-2.9)
P 		103.2
(-1.7)
P 		109
B 175.3
(3)
P 		74.8
(-3)
P 		82.2
(-2.6)
P 		143.7
(1.1)
P 		101
C 211.1
(3)
P 		110.2
(-3)
P 		126.9
(-2)
P 		128.4
(-1.9)
P 		101
avr 191.9
(3) 		88.4
(-3) 		97.2
(-2.5) 		125.1
(-0.9) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 137.7
(-1)
P 		239.9
(3)
P 		99.8
(-2.5)
P 		87.4
(-3)
P 		118.3
(-1.8)
P 		153.4
(-0.4)
P 		153
B 294.1
(3)
P 		174.1
(-0.6)
P 		134.2
(-1.9)
P 		96.4
(-3)
P 		236.2
(1.2)
P 		246.5
(1.6)
P 		198
C 292.1
(3)
P 		151.1
(-0.9)
P 		79.8
(-2.8)
P 		74.1
(-3)
P 		133.6
(-1.4)
P 		249
(1.8)
P 		218
avr 241.3
(3) 		188.4
(1) 		104.6
(-2.3) 		86
(-3) 		162.7
(-0) 		216.3
(2) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2054
Sequence Type Exemplar sequence
Representative Public ID C01A2.4 NCBI
Target Description C01A2.4 /REP_DB=WormBase Gene ID /WP=CE07786 /TR=O02208 /GB=CAB02699.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060956
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000025740 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13400258:13405310:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060956 8/11 Cross Hyb Matching Probes None
SNAP00000025717 8/11 Cross Hyb Matching Probes None
C01A2.4 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13400188-13401979(+) 91.29 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE73028 Hypothetical protein CBG20395 [Caenorhabditis briggsae] 9.0E-96
blast CAB02699 Hypothetical protein C01A2.4 [Caenorhabditis elegans] ref|NP_493357.2| C01A2.4 [Caenorhabditis elegans] 3.0E-58
blast EAL31330 GA18306-PA [Drosophila pseudoobscura] 6.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR005024 EMBL-EBI Snf7 1.1E-14
Pfam IPR005024 EMBL-EBI Snf7 4.3E-19
Sequence
Target Sequence 
>C. ELEGANS:177894_AT
gtggagtacaggcacaaaattcgtacgtttccgaattttcaaaattttgtattatttttc
tcagaaaatttgcaagtttttttaaatttagaaatttccgagattttcacataatttcaa
gtttcaatgctgatggaattttcaagcctttggaatttgaatttctgcattttcagactt
ttcgaatttccggcaaatttgaatttttcagctataaaaattttattttcgaaaaaattt
ccaagttttttttttttttggaaatttgtatacatatgcaaagtatggctaaaatgggct
ctgcaatgggaacaactgtcaaaacaatgaaagcaatgaatgctcaaatgccattggaaa
aagttgccgcaaatatgagagaattccaaatggctcaggaaaaaatgggacttactgaag
agatgatgaacgacactcttgactcgattctcgacgcacctggagacgccgacgaacaag
acgctatcgtgaatcaagttctcgatgaaattggaattgagatgaattcaaagcttgcaa
atgtccctgctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAGTACAGGCACAAAATTCGTA 419 487 257 Antisense
GATTTTCACATAATTTCAAGTTTCA 480 429 358 Antisense
TGAATTTCTGCATTTTCAGACTTTT 502 575 414 Antisense
GTATGGCTAAAATGGGCTCTGCAAT 638 455 539 Antisense
GGGCTCTGCAATGGGAACAACTGTC 203 493 552 Antisense
ATGAATGCTCAAATGCCATTGGAAA 244 43 592 Antisense
GTTGCCGCAAATATGAGAGAATTCC 416 439 619 Antisense
GAACGACACTCTTGACTCGATTCTC 686 345 684 Antisense
GAGACGCCGACGAACAAGACGCTAT 14 395 719 Antisense
GACGCTATCGTGAATCAAGTTCTCG 378 381 736 Antisense
AAAGCTTGCAAATGTCCCTGCTCTT 525 123 786 Antisense
Sequence Source Affymetrix Proprietary Database