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[177893_at]

Description C02F4.3 /REP_DB=WormBase Gene ID /WP=CE07854 /TR=P90741 /GB=CAB02722.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 18      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 9.6
(-0.9)
A 		22.6
(3)
A 		2.8
(-3)
A 		16.4
(1.1)
A 		20
B 16.8
(2.6)
A 		3.4
(-2.6)
A 		17.7
(3)
A 		2.5
(-3)
A 		15
C 13.4
(-3)
A 		20.7
(-1.4)
A 		22.2
(-1)
A 		40.1
(3)
A 		27
avr 13.3
(-3) 		15.6
(-0.8) 		14.2
(-2.2) 		19.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 21.5
(1)
A 		3.9
(-2.8)
A 		16.2
(-0.2)
A 		7.8
(-2)
A 		31.1
(3)
A 		3
(-3)
A 		28
B 2.8
(-2.7)
A 		27.2
(3)
A 		22.5
(1.9)
A 		5.6
(-2.1)
A 		1.6
(-3)
A 		4.7
(-2.3)
A 		26
C 32.4
(3)
A 		10
(-1.5)
A 		2.7
(-2.9)
A 		2.5
(-3)
A 		2.3
(-3)
A 		15.4
(-0.4)
A 		30
avr 18.9
(3) 		13.7
(0.7) 		13.8
(0.8) 		5.3
(-3) 		11.7
(-0.2) 		7.7
(-1.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.5
(1)
A 		4.9
(3)
A 		0.7
(-3)
A 		2.4
(-0.6)
A 		4
B 5.4
(3)
A 		0.8
(-2.6)
A 		4.1
(1.4)
A 		0.5
(-3)
A 		5
C 4.5
(-3)
A 		5.9
(-0.4)
A 		7.7
(3)
A 		6.8
(1.3)
A 		3
avr 4.5
(3) 		3.9
(0.2) 		4.2
(1.6) 		3.2
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4
(-0.7)
A 		1.4
(-2.5)
A 		3.5
(-1.1)
A 		2
(-2.1)
A 		9.4
(3)
A 		0.7
(-3)
A 		9
B 1
(-2.8)
A 		9
(3)
A 		5.5
(0.5)
A 		1.5
(-2.4)
A 		0.7
(-3)
A 		1.8
(-2.2)
A 		8
C 12
(3)
A 		3
(-1.7)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		0.8
(-2.8)
A 		5.1
(-0.6)
A 		12
avr 5.7
(3) 		4.5
(1.4) 		3.2
(-0.4) 		1.3
(-3) 		3.6
(0.1) 		2.5
(-1.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177893_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9826
Sequence Type Exemplar sequence
Representative Public ID C02F4.3 NCBI
Target Description C02F4.3 /REP_DB=WormBase Gene ID /WP=CE07854 /TR=P90741 /GB=CAB02722.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069539 NCBI Caenorhabditis elegans C02F4.3 (C02F4.3) mRNA, complete cds. 11/11 None
C02F4.3 ENSEMBL cdna:known chromosome:CEL140:IV:10502439:10504009:1 gene:C02F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10503586-10504015(+) 78.16 98.62
Public Domain and Genome References
Gene Title
Ensembl C02F4.3
Entrez Gene 182118 Entrez gene
SwissProt P90741 EMBL-EBI
WormBase CE07854 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02722 Hypothetical protein C02F4.3 [Caenorhabditis elegans] ref|NP_501940.1| C02F4.3 [Caenorhabditis elegans] 6.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501940.1 1 63-85
C02F4.3 1 63-85
Sequence
Target Sequence 
>C. ELEGANS:177893_AT
gagaaggagcgcgaacaagaaggacgttgtgggtgggatcagctcgagaagcttagcctg
tgctcgaatcggagaataagagaagggatagaagaagaggagagaaagaagaagagagca
gctttctgctcgatcgacgacaccaaaaagaagctgcttcttcttcttcttcttcttctt
cttcttcaactactcctgctgcgtgttgctgtgctgtcgctgctatcggtgtctgttgcg
gctgctgtcccgggacccgagagccgcaagaacgaaatagtgtgctccgcgatgcgagct
cggttttcgggagaaaaagacgcacacagcggcggcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGGAGCGCGAACAAGAAGGAC 350 389 46 Antisense
GTTGTGGGTGGGATCAGCTCGAGAA 370 437 71 Antisense
AGCTCGAGAAGCTTAGCCTGTGCTC 165 81 86 Antisense
TAGCCTGTGCTCGAATCGGAGAATA 47 651 99 Antisense
GAGAGCAGCTTTCTGCTCGATCGAC 261 395 159 Antisense
CTGCTCGATCGACGACACCAAAAAG 478 231 171 Antisense
TCGCTGCTATCGGTGTCTGTTGCGG 25 601 262 Antisense
AGAACGAAATAGTGTGCTCCGCGAT 629 73 314 Antisense
AATAGTGTGCTCCGCGATGCGAGCT 134 173 321 Antisense
ATGCGAGCTCGGTTTTCGGGAGAAA 197 41 337 Antisense
AAAAAGACGCACACAGCGGCGGCGG 341 127 359 Antisense
Sequence Source Affymetrix Proprietary Database