[Home] | [Total List]

[177892_at]

Description F46B3.8 /REP_DB=WormBase Gene ID /WP=CE18690 /TR=Q9XV20 /GB=CAB04399.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.4
(-3)
A 		8.6
(3)
A 		7.9
(2.2)
A 		3.4
(-3)
A 		5
B 5.3
(0.2)
A 		7.3
(3)
A 		3
(-3)
A 		5.5
(0.5)
A 		4
C 3.3
(-0.9)
A 		2.4
(-2.5)
A 		2.1
(-3)
A 		5.6
(3)
A 		4
avr 4
(-3) 		6.1
(3) 		4.3
(-2.1) 		4.8
(-0.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.6
(-3)
A 		8.6
(2.2)
A 		2.8
(-2.8)
A 		9.5
(3)
A 		3.7
(-2)
A 		5.9
(-0.1)
A 		7
B 2.5
(-2.7)
A 		2.6
(-2.6)
A 		5.4
(-1.2)
A 		13.4
(3)
A 		3.6
(-2.1)
A 		1.9
(-3)
A 		12
C 1.8
(-2.5)
A 		4.6
(-0.6)
A 		2.7
(-1.9)
A 		10
(3)
A 		2.3
(-2.2)
A 		1.1
(-3)
A 		9
avr 2.3
(-3) 		5.3
(-0.9) 		3.6
(-2.1) 		11
(3) 		3.2
(-2.4) 		3
(-2.5) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(-0.4)
A 		1.9
(2.3)
A 		2.1
(3)
A 		0.5
(-3)
A 		2
B 1.7
(2.5)
A 		1.8
(3)
A 		0.7
(-3)
A 		1.2
(-0.3)
A 		1
C 1.1
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.9
(0)
A 		0
avr 1.3
(1) 		1.5
(3) 		1.2
(-0) 		0.9
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.5
(-3)
A 		3.1
(3)
A 		0.6
(-2.8)
A 		2.4
(1.4)
A 		1.1
(-1.6)
A 		1.4
(-0.9)
A 		3
B 0.9
(-2.6)
A 		0.9
(-2.6)
A 		1.3
(-1.8)
A 		3.6
(3)
A 		1.5
(-1.3)
A 		0.7
(-3)
A 		3
C 0.7
(-1.9)
A 		1.4
(0.8)
A 		0.7
(-1.9)
A 		2
(3)
A 		0.7
(-1.9)
A 		0.4
(-3)
A 		2
avr 0.7
(-3) 		1.8
(0.3) 		0.9
(-2.4) 		2.7
(3) 		1.1
(-1.8) 		0.8
(-2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177892_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14351
Sequence Type Exemplar sequence
Representative Public ID F46B3.8 NCBI
Target Description F46B3.8 /REP_DB=WormBase Gene ID /WP=CE18690 /TR=Q9XV20 /GB=CAB04399.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075578 NCBI Caenorhabditis elegans F46B3.8 (F46B3.8) mRNA, complete cds. 11/11 None
GENEFINDER00000039770 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20612435:20621211:-1 11/11 None
F46B3.8 ENSEMBL cdna:known chromosome:CEL140:V:20620701:20621211:-1 gene:F46B3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039764 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20620700-20621211(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46B3.8
Entrez Gene 185833 Entrez gene
SwissProt Q9XV20 EMBL-EBI
WormBase CE18690 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04399 Hypothetical protein F46B3.8 [Caenorhabditis elegans] ref|NP_507979.1| F46B3.8 [Caenorhabditis elegans] 2.0E-78
blast CAB04399 Hypothetical protein F46B3.8 [Caenorhabditis elegans] ref|NP_507979.1| F46B3.8 [Caenorhabditis elegans] 6.0E-77
blast CAB04400 Hypothetical protein F46B3.7 [Caenorhabditis elegans] ref|NP_507978.1| F46B3.7 [Caenorhabditis elegans] 3.0E-72
blast CAB04400 Hypothetical protein F46B3.7 [Caenorhabditis elegans] ref|NP_507978.1| F46B3.7 [Caenorhabditis elegans] 9.0E-45
blast AAC68787 Hypothetical protein F54D10.9 [Caenorhabditis elegans] ref|NP_494664.1| F54D10.9 [Caenorhabditis elegans] 5.0E-38
blast CAB05566 Hypothetical protein M01B2.8 [Caenorhabditis elegans] ref|NP_506778.1| M01B2.8 [Caenorhabditis elegans] 7.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 9.0E-24
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.1E-34
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.6E-34
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 3.1E-25
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.4E-21
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 5.9E-31
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 3.0E-17
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:177892_AT
attttcctggtatttcattttgtggaagctattttcgcatgcattccgacccaagagact
gagccaatcaccccaaaatgttcttcttgcagtcctgtgtatgagacagggtgtatggga
tataatatgccaacaaccacggattggtgtgcaattgttactgtaacatacacatacaca
ccgggtttgccggaggatatgtgcacagcaaatgtcatatgccccgctggtactaaacct
caatacctttctgataatgggtatggaatgactgcctatgtcgatggtgataatggagca
atttcttgtgatgagacaggatacgccatagggcagtggggtgcgtcaattggcgggtct
gaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCCTGGTATTTCATTTTGTGG 257 15 19 Antisense
GAAGCTATTTTCGCATGCATTCCGA 501 341 43 Antisense
TTCCGACCCAAGAGACTGAGCCAAT 201 695 62 Antisense
GCCAATCACCCCAAAATGTTCTTCT 7 279 81 Antisense
TGTTCTTCTTGCAGTCCTGTGTATG 200 563 97 Antisense
CATACACATACACACCGGGTTTGCC 634 211 185 Antisense
GCACAGCAAATGTCATATGCCCCGC 308 317 221 Antisense
GTACTAAACCTCAATACCTTTCTGA 389 459 248 Antisense
GGAATGACTGCCTATGTCGATGGTG 358 531 283 Antisense
GATACGCCATAGGGCAGTGGGGTGC 421 423 338 Antisense
GTGCGTCAATTGGCGGGTCTGAAGA 233 473 359 Antisense
Sequence Source Affymetrix Proprietary Database