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[177890_at]

Description F57E7.2 /REP_DB=WormBase Gene ID /WP=CE18764 /TR=Q9XXT4 /GB=CAA16165.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 59.8
(-0.3)
A 		120.8
(3)
A 		9.7
(-3)
A 		96.3
(1.7)
A 		111
B 68
(-0.1)
A 		41.5
(-2.7)
A 		38.1
(-3)
A 		99.2
(3)
A 		61
C 43.2
(0)
A 		9.1
(-3)
A 		17.1
(-2.3)
A 		76.2
(3)
A 		67
avr 57
(0.1) 		57.1
(0.1) 		21.6
(-3) 		90.6
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 33.2
(-1.9)
A 		37.3
(-1.2)
A 		41.6
(-0.6)
A 		44.5
(-0.2)
A 		25.7
(-3)
A 		65.4
(3)
A 		40
B 36.4
(0.8)
A 		52.9
(3)
A 		8.1
(-3)
A 		10.9
(-2.6)
A 		49
(2.5)
A 		32.6
(0.3)
A 		45
C 56.3
(1.6)
A 		60.4
(2.1)
A 		28.6
(-1.5)
A 		14.8
(-3)
A 		68.4
(3)
A 		18.5
(-2.6)
A 		54
avr 42
(1.2) 		50.2
(3) 		26.1
(-2.4) 		23.4
(-3) 		47.7
(2.4) 		38.8
(0.4) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 21.8
(1.9)
A 		26.2
(3)
A 		2.5
(-3)
A 		14.1
(-0.1)
A 		24
B 21.7
(3)
A 		10.3
(-2.3)
A 		8.8
(-3)
A 		21.1
(2.7)
A 		13
C 14.3
(3)
A 		2.6
(-3)
A 		5.9
(-1.3)
A 		12.9
(2.3)
A 		12
avr 19.3
(3) 		13
(0.2) 		5.7
(-3) 		16
(1.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.1
(-3)
A 		13.3
(1.4)
A 		9.1
(-1.2)
A 		11.3
(0.2)
A 		7.8
(-2)
A 		15.9
(3)
A 		10
B 12.7
(0.6)
A 		17.6
(2.2)
A 		2
(-3)
A 		2.9
(-2.7)
A 		19.9
(3)
A 		12.1
(0.4)
A 		18
C 20.9
(2.6)
A 		18.4
(1.8)
A 		7.3
(-1.6)
A 		3
(-3)
A 		22.1
(3)
A 		6.2
(-2)
A 		19
avr 13.2
(1.1) 		16.4
(2.9) 		6.1
(-2.8) 		5.7
(-3) 		16.6
(3) 		11.4
(0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177890_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14378
Sequence Type Exemplar sequence
Representative Public ID F57E7.2 NCBI
Target Description F57E7.2 /REP_DB=WormBase Gene ID /WP=CE18764 /TR=Q9XXT4 /GB=CAA16165.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074769 NCBI Caenorhabditis elegans F57E7.2 (F57E7.2) mRNA, complete cds. 11/11 None
SNAP00000005879 ENSEMBL cdna:SNAP chromosome:CEL140:V:16485002:16485675:-1 11/11 None
GENEFINDER00000005882 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16484927:16486178:-1 11/11 None
F57E7.2 ENSEMBL cdna:known chromosome:CEL140:V:16485002:16486178:-1 gene:F57E7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16485001-16486178(-) 93.64 100.0
Public Domain and Genome References
Gene Title
Ensembl F57E7.2
Entrez Gene 186451 Entrez gene
SwissProt Q9XXT4 EMBL-EBI
WormBase CE18764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16165 Hypothetical protein F57E7.2 [Caenorhabditis elegans] ref|NP_507170.1| F57E7.2 [Caenorhabditis elegans] 1.0E-123
blast CAA16165 Hypothetical protein F57E7.2 [Caenorhabditis elegans] ref|NP_507170.1| F57E7.2 [Caenorhabditis elegans] 1.0E-120
blast CAA16165 Hypothetical protein F57E7.2 [Caenorhabditis elegans] ref|NP_507170.1| F57E7.2 [Caenorhabditis elegans] 3.0E-90
blast CAI79168 Hypothetical protein F11A5.16 [Caenorhabditis elegans] ref|NP_001023788.1| F11A5.16 [Caenorhabditis elegans] 6.0E-24
blast CAI79168 Hypothetical protein F11A5.16 [Caenorhabditis elegans] ref|NP_001023788.1| F11A5.16 [Caenorhabditis elegans] 1.0E-23
blast CAI79168 Hypothetical protein F11A5.16 [Caenorhabditis elegans] ref|NP_001023788.1| F11A5.16 [Caenorhabditis elegans] 5.0E-23
blast CAB05790 Hypothetical protein T08G3.11 [Caenorhabditis elegans] ref|NP_507168.1| T08G3.11 [Caenorhabditis elegans] 1.0E-17
blast CAB05790 Hypothetical protein T08G3.11 [Caenorhabditis elegans] ref|NP_507168.1| T08G3.11 [Caenorhabditis elegans] 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:177890_AT
gcgattattcagttccaaagctagatagcgaggttcagtatttgattgttgttaaaaatt
catcgttgacaaaacacctgataagaaaattggaaagctataactggacgcttcccgcaa
ttgcgacgttggacaaatggatgagtaagcattgggtaacaatagacccgataaatcgtg
aacaggtttggtcatcgtccggtctaaacttaggaagaaaagaagtgcgagatgcagtaa
agaagttgttgtataagtttaaagctaagaaaaactacataaactatttatgcagtactg
caattgaagaaggaatatttaacaaagcagatactgaaaagatcagaaataactattgga
aacttcaatataaatacacttatcccaacacacaaagtatgctattttctccatactcca
ctgaatattacaaccaaaatattgatccagaggggctagtcaaattgaaggctatttctg
ataagtatctagaggacacgaaacaggagcaacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGATTATTCAGTTCCAAAGCTAGA 185 291 164 Antisense
ATTCATCGTTGACAAAACACCTGAT 539 11 221 Antisense
AAAGCTATAACTGGACGCTTCCCGC 53 125 257 Antisense
GCTTCCCGCAATTGCGACGTTGGAC 657 303 273 Antisense
CGTGAACAGGTTTGGTCATCGTCCG 417 243 340 Antisense
GTCATCGTCCGGTCTAAACTTAGGA 67 467 354 Antisense
TAAATACACTTATCCCAACACACAA 149 641 534 Antisense
CACACAAAGTATGCTATTTTCTCCA 373 195 552 Antisense
TTCTCCATACTCCACTGAATATTAC 592 691 570 Antisense
GATCCAGAGGGGCTAGTCAAATTGA 170 415 607 Antisense
GAGGACACGAAACAGGAGCAACTTT 264 403 655 Antisense
Sequence Source Affymetrix Proprietary Database