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[177889_at]

Description D1086.6 /REP_DB=WormBase Gene ID /WP=CE27370 /TR=O17729 /GB=CAB04023.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 26      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 19.3
(-2.3)
A 		11.8
(-3)
A 		16.2
(-2.6)
A 		78.3
(3)
A 		67
B 11.6
(-3)
A 		47.8
(3)
A 		14.9
(-2.5)
A 		15.4
(-2.4)
A 		36
C 15
(-3)
A 		51.9
(3)
A 		48.1
(2.4)
A 		39
(0.9)
A 		37
avr 15.3
(-3) 		37.2
(1.5) 		26.4
(-0.7) 		44.2
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4861
1 2 3 4 5 6 range
A 8.6
(-3)
A 		9.8
(-3)
A 		48.8
(-2.9)
A 		291
(-2.6)
P 		4632.5
(3)
P 		1846.1
(-0.6)
P 		4624
B 9.7
(-3)
A 		11.9
(-3)
A 		30.2
(-3)
A 		190
(-2.8)
P 		4867.5
(3)
P 		1740.3
(-0.9)
P 		4858
C 9.2
(-3)
A 		61.9
(-2.9)
A 		6.6
(-3)
A 		277.7
(-2.6)
P 		4005.6
(3)
P 		2058
(0.1)
P 		3999
avr 9.2
(-3) 		27.9
(-3) 		28.5
(-3) 		252.9
(-2.7) 		4501.9
(3) 		1881.5
(-0.5) 		4493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7
(-0)
A 		2.6
(-3)
A 		4.2
(-1.9)
A 		11.5
(3)
A 		9
B 3.7
(-2.7)
A 		11.8
(3)
A 		3.5
(-2.9)
A 		3.3
(-3)
A 		9
C 5
(-3)
A 		14.9
(2)
A 		16.8
(3)
A 		6.6
(-2.2)
A 		12
avr 5.2
(-3) 		9.8
(3) 		8.2
(0.9) 		7.1
(-0.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1976
1 2 3 4 5 6 range
A 1.6
(-3)
A 		3.5
(-3)
A 		10.6
(-3)
A 		73.8
(-2.7)
P 		1397.9
(3)
P 		449.5
(-1.1)
P 		1396
B 3.4
(-3)
A 		4
(-3)
A 		7.3
(-3)
A 		50.3
(-2.9)
P 		1977.6
(3)
P 		649
(-1)
P 		1974
C 3.4
(-3)
A 		18.9
(-2.9)
A 		1.7
(-3)
A 		55.8
(-2.7)
P 		1296.2
(3)
P 		688.9
(0.2)
P 		1295
avr 2.8
(-3) 		8.8
(-3) 		6.5
(-3) 		60
(-2.8) 		1557.2
(3) 		595.8
(-0.7) 		1554
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177889_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14275
Sequence Type Exemplar sequence
Representative Public ID D1086.6 NCBI
Target Description D1086.6 /REP_DB=WormBase Gene ID /WP=CE27370 /TR=O17729 /GB=CAB04023.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028578(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028578 NCBI Caenorhabditis elegans D1086.10 (D1086.10) mRNA, complete cds. 10/11 None
SNAP00000017531 ENSEMBL cdna:SNAP chromosome:CEL140:V:14085397:14086074:1 10/11 None
GENEFINDER00000017545 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14084520:14086074:1 11/11 None
D1086.10 ENSEMBL cdna:known chromosome:CEL140:V:14085397:14086251:1 gene:D1086.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14082465-14086074(+) 90.11 100.0
Public Domain and Genome References
Gene Title
Ensembl D1086.10
Entrez Gene 179905 Entrez gene
SwissProt Q5FC40 EMBL-EBI
WormBase CE37962 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI46569 Hypothetical protein D1086.10 [Caenorhabditis elegans] ref|NP_001023749.1| D1086.10 [Caenorhabditis elegans] 2.0E-65
blast CAI46569 Hypothetical protein D1086.10 [Caenorhabditis elegans] ref|NP_001023749.1| D1086.10 [Caenorhabditis elegans] 2.0E-61
blast CAB04023 Hypothetical protein D1086.6 [Caenorhabditis elegans] ref|NP_506492.2| D1086.6 [Caenorhabditis elegans] 1.0E-23
blast CAB04023 Hypothetical protein D1086.6 [Caenorhabditis elegans] ref|NP_506492.2| D1086.6 [Caenorhabditis elegans] 4.0E-23
Sequence
Target Sequence 
>C. ELEGANS:177889_AT
gagaacaccacagttcgtcgtcttcaaaatgatttggcaatttctaaccacacttttggt
tctatctgctacgcccacactctcatttacaactgcgcccactggcacttctcccacagt
tgatacatcagctgtgattgcaccaaacccggagagcagcccttcacaatcaactgactc
accaagtacagcatcatcaacagcgacagaacaaatattcacgccaagtacttctgaacc
aacaagtactactacaacagcacccggaactactgaacttccatttgaatggaatgttac
cgcacctccatcagttgtgtccaaatggtgcatgataaaattacaaaaaaacaatgcaca
atttactattgattttattgagaatgccgaagagccatatgaagaggctgttgaagagac
tctatgtgtgcaactcaatcgcaaatctttcgagacaaggctggaagatttgacaaacta
ttgtggacaacgggaatcagatgcctttaaggagtatgtcgccaaccggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACACCACAGTTCGTCGTCTTC 75 391 705 Antisense
TTGGCAATTTCTAACCACACTTTTG 39 697 738 Antisense
CACACTTTTGGTTCTATCTGCTACG 67 195 753 Antisense
CTTCTCCCACAGTTGATACATCAGC 613 219 812 Antisense
GATTGCACCAAACCCGGAGAGCAGC 191 433 840 Antisense
CCTTCACAATCAACTGACTCACCAA 508 269 865 Antisense
GACTCACCAAGTACAGCATCATCAA 540 373 880 Antisense
ACAGCACCCGGAACTACTGAACTTC 594 107 961 Antisense
GAATGGAATGTTACCGCACCTCCAT 240 333 991 Antisense
GACTCTATGTGTGCAACTCAATCGC 139 375 1122 Antisense
TAAGGAGTATGTCGCCAACCGGAGA 227 635 1212 Antisense
Sequence Source Affymetrix Proprietary Database