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[177888_at]

Description C14B4.2 /REP_DB=WormBase Gene ID /WP=CE18500 /TR=O45251 /GB=CAB03966.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 97.6
(1)
A 		77
(-1.1)
M 		58.6
(-3)
A 		116.5
(3)
M 		58
B 74.1
(-0.8)
P 		112.7
(3)
P 		51.5
(-3)
A 		77.8
(-0.4)
P 		61
C 76.1
(-3)
A 		93.4
(-1.2)
P 		91.8
(-1.4)
A 		135.2
(3)
P 		59
avr 82.6
(-0.8) 		94.4
(0.8) 		67.3
(-3) 		109.8
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 126.3
(3)
M 		55.1
(-3)
A 		92.3
(0.1)
P 		102.1
(1)
M 		87.3
(-0.3)
A 		70
(-1.7)
A 		71
B 90.3
(2.6)
P 		87.5
(2.1)
A 		55.5
(-3)
A 		93.1
(3)
A 		66.9
(-1.2)
A 		66.8
(-1.2)
A 		38
C 90.4
(1.6)
P 		55.1
(-0.6)
A 		112
(3)
A 		17.4
(-3)
A 		108.8
(2.8)
M 		58.3
(-0.4)
A 		95
avr 102.3
(3) 		65.9
(-2.9) 		86.6
(0.5) 		70.9
(-2.1) 		87.7
(0.7) 		65
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 35.5
(3)
A 		16.7
(-2.6)
M 		15.3
(-3)
A 		17
(-2.5)
M 		20
B 23.6
(1.4)
P 		27.8
(3)
P 		11.9
(-3)
A 		16.6
(-1.2)
P 		16
C 25.2
(-1.4)
A 		26.9
(-0.3)
P 		32
(3)
A 		22.8
(-3)
P 		9
avr 28.1
(3) 		23.8
(0.2) 		19.7
(-2.4) 		18.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 23.3
(1.1)
M 		19.6
(-1.3)
A 		20.1
(-1)
P 		25.9
(2.7)
M 		26.3
(3)
A 		17
(-3)
A 		9
B 31.4
(3)
P 		29.1
(2.2)
A 		13.5
(-3)
A 		24.7
(0.8)
A 		27.2
(1.6)
A 		24.9
(0.8)
A 		18
C 33.5
(2.7)
P 		16.8
(-0.5)
A 		28.5
(1.7)
A 		3.5
(-3)
A 		35.2
(3)
M 		19.5
(0)
A 		32
avr 29.4
(2.9) 		21.8
(-1) 		20.7
(-1.6) 		18
(-3) 		29.6
(3) 		20.5
(-1.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177888_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14661
Sequence Type Exemplar sequence
Representative Public ID C14B4.2 NCBI
Target Description C14B4.2 /REP_DB=WormBase Gene ID /WP=CE18500 /TR=O45251 /GB=CAB03966.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075366 NCBI Caenorhabditis elegans C14B4.2 (C14B4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000010486 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19334504:19346583:-1 11/11 None
C14B4.2 ENSEMBL cdna:known chromosome:CEL140:V:19335267:19347805:-1 gene:C14B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19335327-19347805(-) 98.1 99.57
Public Domain and Genome References
Gene Title
Ensembl C14B4.2
Entrez Gene 182595 Entrez gene
SwissProt O45251 EMBL-EBI
WormBase CE18500 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03966 Hypothetical protein C14B4.2 [Caenorhabditis elegans] emb|CAB03887.1| Hypothetical protein C14B4.2 [Caenorhabditis elegans] ref|NP_507767.1| C14B4.2 [Caenorhabditis elegans] 0.0
blast CAE61689 Hypothetical protein CBG05635 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177888_AT
cgtcaaatccggtgtcttgggctactgtagctcggtgtttgcggacttgacacccgattt
gacgggattttgcacaaaacttttgaaaactgggggatcgagaaaaaaggcccaaaatat
ccggaatttcaaaaacagaggcccaaaacttggccgaaactcagaaattttcaaatttca
agttgattcttggatttcccataacaaatatcccctggccccccgatttcaaaattttag
tgcaatttgtcgtcaaatccgactaaaacaaaaagttcaaacaatttgtgctccacgccc
ggtgctcacaatgcccatccaacgaatgccatcctccaacgatctggtgatgaagaagct
ccaagtcaaaaatgccatctcaaatttggatcttcgatcgttcggaagtcaatcctcact
gacgtcactagattttggcacggtgccagatttcggaagccctctgcaattttcgagcaa
agccggcggattccagagatcgaagatcccgctgggctcgttcaggagccctaagaagcc
tatgagccggactagaacgcctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCAAATCCGGTGTCTTGGGCTAC 21 205 3621 Antisense
TTGCGGACTTGACACCCGATTTGAC 654 699 3659 Antisense
TCCCATAACAAATATCCCCTGGCCC 466 597 3817 Antisense
TTCAAACAATTTGTGCTCCACGCCC 524 685 3896 Antisense
GCCATCCTCCAACGATCTGGTGATG 131 281 3948 Antisense
TCAATCCTCACTGACGTCACTAGAT 452 633 4029 Antisense
GGCACGGTGCCAGATTTCGGAAGCC 484 535 4057 Antisense
GAAGCCCTCTGCAATTTTCGAGCAA 203 345 4076 Antisense
AAAGCCGGCGGATTCCAGAGATCGA 15 125 4099 Antisense
GGAGCCCTAAGAAGCCTATGAGCCG 366 521 4145 Antisense
CTATGAGCCGGACTAGAACGCCTAC 560 221 4160 Antisense
Sequence Source Affymetrix Proprietary Database