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[177886_at]

Description F57E7.1 /REP_DB=WormBase Gene ID /WP=CE18763 /TR=Q9XXT3 /GB=CAA16166.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 47      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 596
1 2 3 4 range
A 581.1
(3)
P 		100.8
(-2.5)
M 		57
(-3)
A 		152.5
(-1.9)
A 		524
B 521.3
(3)
P 		61.2
(-3)
A 		72.4
(-2.9)
A 		172.2
(-1.6)
P 		460
C 622.7
(3)
P 		26.4
(-3)
A 		77.7
(-2.5)
A 		89.9
(-2.4)
A 		596
avr 575
(3) 		62.8
(-3) 		69
(-2.9) 		138.2
(-2.1) 		512

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 177
(-1.2)
P 		57.9
(-2.8)
A 		44.1
(-3)
A 		424.7
(2.1)
P 		493
(3)
P 		263.1
(-0.1)
P 		449
B 156.4
(-2.2)
P 		96.6
(-3)
A 		97.9
(-3)
A 		368.7
(0.5)
P 		564.4
(3)
P 		273.1
(-0.7)
P 		468
C 141.8
(-1.7)
P 		119.3
(-2)
A 		40.2
(-3)
A 		424.3
(2)
P 		497.7
(3)
P 		298.8
(0.4)
P 		458
avr 158.4
(-1.7) 		91.3
(-2.6) 		60.7
(-3) 		405.9
(1.5) 		518.4
(3) 		278.3
(-0.1) 		458
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 211.6
(3)
P 		21.9
(-2.8)
M 		14.9
(-3)
A 		22.3
(-2.8)
A 		197
B 166.3
(3)
P 		15.1
(-3)
A 		16.8
(-2.9)
A 		36.7
(-2.1)
P 		151
C 206.1
(3)
P 		7.6
(-3)
A 		27.1
(-2.4)
A 		15.2
(-2.8)
A 		199
avr 194.7
(3) 		14.9
(-3) 		19.6
(-2.8) 		24.7
(-2.7) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 32.6
(-2)
P 		20.6
(-2.5)
A 		9.6
(-3)
A 		107.7
(1.2)
P 		148.8
(3)
P 		64.1
(-0.7)
P 		139
B 54.4
(-2.1)
P 		32.1
(-2.8)
A 		23.8
(-3)
A 		97.6
(-0.8)
P 		229.3
(3)
P 		101.8
(-0.7)
P 		206
C 52.5
(-1.3)
P 		36.4
(-2)
A 		10.2
(-3)
A 		85.3
(-0)
P 		161
(3)
P 		100
(0.6)
P 		151
avr 46.5
(-1.8) 		29.7
(-2.4) 		14.5
(-3) 		96.9
(-0) 		179.7
(3) 		88.6
(-0.3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14269
Sequence Type Exemplar sequence
Representative Public ID F57E7.1 NCBI
Target Description F57E7.1 /REP_DB=WormBase Gene ID /WP=CE18763 /TR=Q9XXT3 /GB=CAA16166.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074768 NCBI Caenorhabditis elegans F57E7.1 (F57E7.1) mRNA, complete cds. 11/11 None
SNAP00000005878 ENSEMBL cdna:SNAP chromosome:CEL140:V:16484188:16484582:1 11/11 None
GENEFINDER00000005883 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16484188:16484582:1 11/11 None
F57E7.1 ENSEMBL cdna:known chromosome:CEL140:V:16484188:16484582:1 gene:F57E7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16484187-16484582(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57E7.1
Entrez Gene 186450 Entrez gene
SwissProt Q9XXT3 EMBL-EBI
WormBase CE18763 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16166 Hypothetical protein F57E7.1 [Caenorhabditis elegans] ref|NP_507169.1| F57E7.1 [Caenorhabditis elegans] 1.0E-48
blast NP_504787 F20A1.1 [Caenorhabditis elegans] gb|AAA96131.1| Hypothetical protein F20A1.1 [Caenorhabditis elegans] 3.0E-31
blast CAE71990 Hypothetical protein CBG19065 [Caenorhabditis briggsae] 1.0E-22
Sequence
Target Sequence 
>C. ELEGANS:177886_AT
gtgcaaactttttgtagccgtcgccttttgcgctctcgtctatgctaatcaaatgccacc
agctgatgagatgaagaccaagctagttgccgctggagtctccgatgctgctgccgccgg
actcgtcgacatcggagagaagtacaggagccaagtgcaagctctcatcaagggagatga
tgaagctggatggaaacttttcaatactatcaaggcagagtctgacgcctacattgctac
ccagcccgaaactgaccaaaccgcttacaatgcatttgttgaaaagaccaaggctaactt
ccaagcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAAACTTTTTGTAGCCGTCGCC 625 479 15 Antisense
TGCGCTCTCGTCTATGCTAATCAAA 522 583 43 Antisense
GCTAATCAAATGCCACCAGCTGATG 667 301 58 Antisense
GAAGACCAAGCTAGTTGCCGCTGGA 555 339 87 Antisense
TCGTCGACATCGGAGAGAAGTACAG 43 599 137 Antisense
GCCAAGTGCAAGCTCTCATCAAGGG 349 277 164 Antisense
AAACTTTTCAATACTATCAAGGCAG 137 127 208 Antisense
CAAGGCAGAGTCTGACGCCTACATT 594 183 225 Antisense
GAAACTGACCAAACCGCTTACAATG 274 355 262 Antisense
AAACCGCTTACAATGCATTTGTTGA 490 125 272 Antisense
AGACCAAGGCTAACTTCCAAGCATA 43 71 299 Antisense
Sequence Source Affymetrix Proprietary Database