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[177885_at] 7TM chemoreceptor, srw family

Description C41G6.2 /REP_DB=WormBase Gene ID /WP=CE15700 /TR=O17654 /GB=CAB02826.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 04      6grp_cgc > 91      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 7.5
(-1.5)
A 		2.6
(-2.7)
A 		1.5
(-3)
A 		25.3
(3)
A 		24
B 32.3
(3)
A 		3.5
(-2.9)
A 		3
(-3)
A 		13
(-1)
A 		29
C 6.2
(-2.8)
A 		3.3
(-3)
A 		5.3
(-2.9)
A 		106
(3)
A 		103
avr 15.3
(-1.4) 		3.1
(-3) 		3.3
(-3) 		48.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 29.3
(3)
A 		3.7
(-2.5)
A 		19.1
(0.8)
A 		6
(-2)
A 		10.2
(-1.1)
A 		1.4
(-3)
A 		28
B 3
(-3)
A 		4.6
(-2.6)
A 		29.7
(3)
A 		6.5
(-2.2)
A 		9.4
(-1.6)
A 		5.9
(-2.3)
A 		27
C 2.4
(-2.6)
A 		9.2
(-0.1)
A 		17.5
(3)
A 		3.9
(-2.1)
A 		1.4
(-3)
A 		3.8
(-2.1)
A 		16
avr 11.6
(-0.4) 		5.8
(-2.3) 		22.1
(3) 		5.5
(-2.4) 		7
(-1.9) 		3.7
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.7
(1.2)
A 		0.6
(-2.6)
A 		0.4
(-3)
A 		3.7
(3)
A 		3
B 10.3
(3)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		2.8
(-1.7)
A 		10
C 2
(-2.6)
A 		0.9
(-3)
A 		1.8
(-2.7)
A 		17.9
(3)
A 		17
avr 5
(0.5) 		0.8
(-3) 		1
(-2.8) 		8.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.4
(3)
A 		1.3
(-1.8)
A 		4.2
(1.6)
A 		1.5
(-1.6)
A 		3.1
(0.3)
A 		0.3
(-3)
A 		5
B 1
(-3)
A 		1.5
(-2.5)
A 		7.2
(3)
A 		1.7
(-2.3)
A 		3.8
(-0.3)
A 		2.2
(-1.8)
A 		6
C 0.9
(-2.3)
A 		2.8
(0.5)
A 		4.5
(3)
A 		0.8
(-2.4)
A 		0.4
(-3)
A 		1.3
(-1.7)
A 		4
avr 2.4
(-1.4) 		1.9
(-2.1) 		5.3
(3) 		1.3
(-3) 		2.4
(-1.4) 		1.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177885_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14072
Sequence Type Exemplar sequence
Representative Public ID C41G6.2 NCBI
Target Description C41G6.2 /REP_DB=WormBase Gene ID /WP=CE15700 /TR=O17654 /GB=CAB02826.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074368 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-12) (srw-12) mRNA, complete cds. 11/11 None
C41G6.2 ENSEMBL cdna:known chromosome:CEL140:V:15239920:15241236:-1 gene:C41G6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010443 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15240320-15242901(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-12
Ensembl C41G6.2
Entrez Gene 183379 Entrez gene
SwissProt O17654 EMBL-EBI
WormBase CE33762 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02826 Hypothetical protein C41G6.2 [Caenorhabditis elegans] emb|CAB60294.2| Hypothetical protein C41G6.2 [Caenorhabditis elegans] ref|NP_506769.2| Serpentine Receptor, class W family member (srw-12) [Caenorhabditis elegans] 0.0
blast CAD89748 Hypothetical protein M01B2.11 [Caenorhabditis elegans] ref|NP_001024058.1| Serpentine Receptor, class W family member (srw-11) [Caenorhabditis elegans] 1.0E-118
blast CAB02828 Hypothetical protein C41G6.3 [Caenorhabditis elegans] ref|NP_506766.1| Serpentine Receptor, class W family member (srw-15) [Caenorhabditis elegans] 3.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506769.2 4 23-45,52-74,118-135,156-178
C41G6.2 4 23-45,52-74,118-135,156-178
Sequence
Target Sequence 
>C. ELEGANS:177885_AT
acctgaaatcaatccaattcctccgccatgtttacgcagcgactataaagattttatccc
agtgatcaaactgcagcagaaactggaggctttagggcatcgactagcagtttggttggc
aattttattgtgttttataagaattatatctctcaaatctcacacgaagagttgggttgg
gaagattaacaagccaaaaaatacgatatatatgatggctgggattgcaactttttggct
tttactcgattcatggcagtttttattcactacagtattttggttgcccgacaatattgc
agacgtatgcaaagtacttcctccgaaattcataaagcaaatcaacgtgtatgcaattcc
ttcgagtatcaatagtatttcaacttatatttacgaactcagtcccaaacttaaaatcgc
atctgtagtacttcttgtgacgttgacttgtattttattccgagtacggaagctctccgt
actcgaaaacgatgaatcatcggataacacgaggctgattttattcatgtctgttttgtt
cacatttcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTGAAATCAATCCAATTCCTCCG 418 87 1122 Antisense
TCCGCCATGTTTACGCAGCGACTAT 147 597 1143 Antisense
AACTGGAGGCTTTAGGGCATCGACT 355 143 1202 Antisense
GGCATCGACTAGCAGTTTGGTTGGC 708 535 1217 Antisense
TTATATCTCTCAAATCTCACACGAA 577 679 1265 Antisense
GCAACTTTTTGGCTTTTACTCGATT 387 317 1348 Antisense
GACGTATGCAAAGTACTTCCTCCGA 411 377 1423 Antisense
AACGTGTATGCAATTCCTTCGAGTA 162 145 1465 Antisense
AAATCGCATCTGTAGTACTTCTTGT 245 119 1535 Antisense
GAAGCTCTCCGTACTCGAAAACGAT 590 341 1590 Antisense
TGTCTGTTTTGTTCACATTTCCTGA 459 557 1649 Antisense
Sequence Source Affymetrix Proprietary Database