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[177884_at]

Description T20B3.7 /REP_DB=WormBase Gene ID /WP=CE20092 /TR=Q9XUP0 /GB=CAB04736.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 19      6grp_cgc > 98      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 41
(0.8)
A
39.7
(0.3)
A
30.1
(-3)
A
47.3
(3)
A
17
B 17.2
(-0.6)
A
8.2
(-3)
A
30.4
(3)
A
30.4
(3)
A
22
C 15.5
(-2)
A
45.5
(1.4)
A
7
(-3)
A
59.5
(3)
A
53
avr 24.6
(-2.5)
31.1
(-0.8)
22.5
(-3)
45.7
(3)
23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 68.7
(3)
A
24
(-2.3)
A
46.2
(0.3)
A
47.3
(0.5)
A
68.2
(2.9)
A
18
(-3)
A
51
B 4.7
(-3)
A
19.3
(-1.6)
A
31.7
(-0.3)
A
40.3
(0.5)
A
65.5
(3)
P
34.4
(-0.1)
A
61
C 5.1
(-3)
A
46.2
(1.7)
A
17.3
(-1.6)
A
18
(-1.5)
A
58
(3)
M
28.8
(-0.3)
A
53
avr 26.2
(-3)
29.8
(-2.4)
31.7
(-2.1)
35.2
(-1.6)
63.9
(3)
27.1
(-2.9)
38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.9
(3)
A
8.6
(-1.7)
A
7.9
(-2.3)
A
6.9
(-3)
A
8
B 5.5
(1.2)
A
2
(-3)
A
7
(3)
A
6.5
(2.4)
A
5
C 5.1
(-1.5)
A
13.1
(3)
A
2.4
(-3)
A
10
(1.3)
A
11
avr 8.5
(3)
7.9
(1.7)
5.8
(-3)
7.8
(1.4)
3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 12.7
(0.1)
A
8.5
(-1.5)
A
10.1
(-0.9)
A
12
(-0.2)
A
20.6
(3)
A
4.4
(-3)
A
16
B 1.6
(-3)
A
6.4
(-1.8)
A
7.7
(-1.5)
A
10.7
(-0.8)
A
26.6
(3)
P
12.8
(-0.3)
A
25
C 1.9
(-3)
A
14.1
(1.3)
A
4.4
(-2.1)
A
3.6
(-2.4)
A
18.8
(3)
M
9.6
(-0.3)
A
17
avr 5.4
(-3)
9.7
(-1.4)
7.4
(-2.3)
8.8
(-1.8)
22
(3)
8.9
(-1.7)
17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14288
Sequence Type Exemplar sequence
Representative Public ID T20B3.7 NCBI
Target Description T20B3.7 /REP_DB=WormBase Gene ID /WP=CE20092 /TR=Q9XUP0 /GB=CAB04736.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074850(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_074850 NCBI Caenorhabditis elegans Proline HYdroxylase family member (phy-3) (phy-3) mRNA, complete cds. 11/11 None
SNAP00000028350 ENSEMBL cdna:SNAP chromosome:CEL140:V:16840127:16841652:1 11/11 None
GENEFINDER00000028359 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16838509:16841652:1 11/11 None
T20B3.7 ENSEMBL cdna:known chromosome:CEL140:V:16835897:16841652:1 gene:T20B3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16840283-16841652(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol phy-3
Ensembl T20B3.7
Entrez Gene 188624 Entrez gene
SwissProt Q9XUP0 EMBL-EBI
WormBase CE33834 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
19538 protein metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04736 Hypothetical protein T20B3.7 [Caenorhabditis elegans] ref|NP_507251.2| Proline HYdroxylase family member (phy-3) [Caenorhabditis elegans] 0.0
blast CAB04736 Hypothetical protein T20B3.7 [Caenorhabditis elegans] ref|NP_507251.2| Proline HYdroxylase family member (phy-3) [Caenorhabditis elegans] 1.0E-145
blast CAB04736 Hypothetical protein T20B3.7 [Caenorhabditis elegans] ref|NP_507251.2| Proline HYdroxylase family member (phy-3) [Caenorhabditis elegans] 1.0E-140
blast CAE56606 Hypothetical protein CBG24361 [Caenorhabditis briggsae] 6.0E-76
blast CAE56606 Hypothetical protein CBG24361 [Caenorhabditis briggsae] 8.0E-76
blast CAE56606 Hypothetical protein CBG24361 [Caenorhabditis briggsae] 3.0E-71
blast CAE61721 Hypothetical protein CBG05671 [Caenorhabditis briggsae] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 1.2E-14
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 4.1E-8
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 1.2E-14
Sequence
Target Sequence
>C. ELEGANS:177884_AT
tagaaacgacgcatcgacgggccaacggtagttttattccgccggaagattcgaatgtta
cagtggaaataaagatgcaggctcagaaaaggattcccggcttgaaccttaccgttgccg
aacatttttcggccctctcctacctgcccggtggtcattacgcagtgcactatgactatt
tggattaccgtagcaaacaggactacgactggtggatgaacaagacgggaaaccgaattg
gaactctcatttttgtactgaaacctgctgagaagggtggaggcaccgtattcccaagta
ttggttccacagttcgcgccaacgctggagacgcgtttttctggttcaacgcacaggctg
atgaagagaaggagatgctcagcaatcatggtggatgtccaatctatgagggccgaaagg
tgatcgcgactatttggatccgtgcctacaatcaacgtatccttccgatggctccagctg
gctcctccatacatgcttcgtggcttataccgtctctctcaaacagattcc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TAGAAACGACGCATCGACGGGCCAA 424 639 164 Antisense
GTTGCCGAACATTTTTCGGCCCTCT 622 439 277 Antisense
CTGCCCGGTGGTCATTACGCAGTGC 512 95 307 Antisense
GGCACCGTATTCCCAAGTATTGGTT 37 523 445 Antisense
GTTTTTCTGGTTCAACGCACAGGCT 160 447 498 Antisense
GGATGTCCAATCTATGAGGGCCGAA 419 513 556 Antisense
GGCCGAAAGGTGATCGCGACTATTT 351 541 574 Antisense
GACTATTTGGATCCGTGCCTACAAT 32 373 591 Antisense
TACAATCAACGTATCCTTCCGATGG 199 637 610 Antisense
TACATGCTTCGTGGCTTATACCGTC 141 645 653 Antisense
ATACCGTCTCTCTCAAACAGATTCC 277 23 670 Antisense
Sequence Source Affymetrix Proprietary Database