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[177883_at]

Description K05C4.8 /REP_DB=WormBase Gene ID /WP=CE19976 /TR=Q9XUU6 /GB=CAB04571.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.2
(1.8)
A 		2.7
(-2)
A 		2.3
(-3)
A 		4.7
(3)
A 		2
B 4.6
(1.8)
A 		3
(-2.3)
A 		2.7
(-3)
A 		5.1
(3)
A 		2
C 2.3
(-2.9)
A 		2.3
(-2.9)
A 		2.2
(-3)
A 		12.5
(3)
A 		10
avr 3.7
(-1.4) 		2.7
(-2.6) 		2.4
(-3) 		7.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.7
(-1.6)
A 		2.9
(-2.5)
A 		2.5
(-3)
A 		7.2
(2.3)
A 		5.5
(0.4)
A 		7.8
(3)
A 		5
B 2.3
(-2.4)
A 		3.8
(-1.6)
A 		1.1
(-3)
A 		5.4
(-0.8)
A 		12.9
(3)
A 		3.4
(-1.8)
A 		12
C 1.5
(-3)
A 		2.1
(-2.6)
A 		10.7
(3)
A 		3.9
(-1.4)
A 		1.5
(-3)
A 		4.9
(-0.8)
A 		9
avr 2.5
(-3) 		2.9
(-2.4) 		4.8
(0.4) 		5.5
(1.4) 		6.6
(3) 		5.4
(1.2) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.5
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.7
(-2.3)
A 		1
B 1.5
(3)
A 		0.7
(-2.3)
A 		0.6
(-3)
A 		1.1
(0.3)
A 		1
C 0.8
(-2.6)
A 		0.7
(-3)
A 		0.8
(-2.6)
A 		2.1
(3)
A 		1
avr 1.3
(3) 		0.7
(-3) 		0.7
(-3) 		1.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.7
(-2.1)
A 		1
(-0.9)
A 		0.5
(-3)
A 		1.8
(2.6)
A 		1.7
(2.1)
A 		1.9
(3)
A 		1
B 0.8
(-2.4)
A 		1.3
(-1.8)
A 		0.3
(-3)
A 		1.4
(-1.7)
A 		5.2
(3)
A 		1.3
(-1.8)
A 		5
C 0.6
(-2.7)
A 		0.6
(-2.7)
A 		2.7
(3)
A 		0.8
(-2.2)
A 		0.5
(-3)
A 		1.6
(0)
A 		2
avr 0.7
(-3) 		1
(-2) 		1.2
(-1.3) 		1.3
(-1) 		2.5
(3) 		1.6
(0) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177883_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2415
Sequence Type Exemplar sequence
Representative Public ID K05C4.8 NCBI
Target Description K05C4.8 /REP_DB=WormBase Gene ID /WP=CE19976 /TR=Q9XUU6 /GB=CAB04571.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061162 NCBI Caenorhabditis elegans K05C4.8 (K05C4.8) mRNA, complete cds. 11/11 None
GENEFINDER00000018545 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14740544:14741667:1 11/11 None
K05C4.8 ENSEMBL cdna:known chromosome:CEL140:I:14740544:14741667:1 gene:K05C4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018538 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14740474-14741598(+) 96.93 100.0
Public Domain and Genome References
Gene Title
Ensembl K05C4.8
Entrez Gene 187020 Entrez gene
SwissProt Q9XUU6 EMBL-EBI
WormBase CE19976 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04571 Hypothetical protein K05C4.8 [Caenorhabditis elegans] ref|NP_493563.1| K05C4.8 [Caenorhabditis elegans] 2.0E-75
blast CAC48133 Hypothetical protein Y105E8A.13 [Caenorhabditis elegans] ref|NP_740941.1| Y105E8A.13 [Caenorhabditis elegans] 3.0E-21
blast CAE64136 Hypothetical protein CBG08752 [Caenorhabditis briggsae] 6.0E-11
Sequence
Target Sequence 
>C. ELEGANS:177883_AT
ggagcagatccttacaatagttttatcttgatttttatgctatttaccactgggcagcag
ccactcaactgtggaagccctatgagcttggccgtctcgatttcctgggcagttggtcct
acttgtgcattcaattcgccgatgttaccagtgaagaagttatcgcctaacgtcctaatc
ctaagcagctccaaggacatatccaaggaagttctatcaaatgtgatagtcattgagaat
ggccaccaagtcgaacggaattttcgagatgctagagcattggctgagaagctcggaaaa
cgaatcgtaaagccaactgtcccagaggacacctcaactacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAGATCCTTACAATAGTTTTA 651 519 34 Antisense
TATCTTGATTTTTATGCTATTTACC 516 659 57 Antisense
TGCTATTTACCACTGGGCAGCAGCC 323 579 71 Antisense
TCGATTTCCTGGGCAGTTGGTCCTA 264 603 130 Antisense
GAAGTTATCGCCTAACGTCCTAATC 510 335 189 Antisense
GTCCTAATCCTAAGCAGCTCCAAGG 432 477 205 Antisense
GCAGCTCCAAGGACATATCCAAGGA 494 313 218 Antisense
GAATGGCCACCAAGTCGAACGGAAT 437 333 270 Antisense
AACGGAATTTTCGAGATGCTAGAGC 271 143 287 Antisense
CGTAAAGCCAACTGTCCCAGAGGAC 245 245 339 Antisense
GTCCCAGAGGACACCTCAACTACAC 538 475 352 Antisense
Sequence Source Affymetrix Proprietary Database