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[177882_at]

Description F22B5.6 /REP_DB=WormBase Gene ID /WP=CE02201 /TR=Q19710 /GB=CAA90358.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 19.1
(-2)
A 		3.4
(-3)
A 		3.3
(-3)
A 		96.8
(3)
A 		94
B 6.2
(-3)
A 		12.3
(-2.4)
A 		33.3
(-0.5)
A 		71.2
(3)
A 		65
C 43.6
(-1.7)
A 		36.8
(-2.4)
A 		30.9
(-3)
A 		91.5
(3)
A 		61
avr 23
(-2.5) 		17.5
(-3) 		22.5
(-2.6) 		86.5
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 10.3
(-2.6)
A 		2.3
(-3)
A 		33.2
(-1.4)
A 		4.1
(-2.9)
A 		114.7
(3)
P 		69.5
(0.6)
A 		112
B 35.2
(-0.4)
A 		46.1
(0.5)
A 		21.5
(-1.7)
A 		6.5
(-3)
A 		73.1
(2.9)
A 		74
(3)
A 		68
C 3.7
(-3)
A 		27.1
(-1.3)
A 		10.4
(-2.5)
A 		6.6
(-2.8)
A 		51.3
(0.4)
A 		86.7
(3)
M 		83
avr 16.4
(-2.1) 		25.2
(-1.4) 		21.7
(-1.7) 		5.7
(-3) 		79.7
(3) 		76.7
(2.8) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7
(-0.2)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		14.2
(3)
A 		14
B 2
(-3)
A 		3
(-2.5)
A 		7.7
(-0.4)
A 		15.2
(3)
A 		13
C 14.4
(1.8)
A 		10.6
(-3)
A 		10.8
(-2.8)
A 		15.4
(3)
A 		5
avr 7.8
(-1.2) 		4.8
(-3) 		6.5
(-2) 		14.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 1.9
(-2.8)
A 		0.8
(-3)
A 		7.2
(-1.9)
A 		1
(-3)
A 		34.6
(3)
P 		16.9
(-0.1)
A 		34
B 12.2
(-0.8)
A 		15.3
(-0.1)
A 		5.2
(-2.3)
A 		1.7
(-3)
A 		29.7
(3)
A 		27.6
(2.6)
A 		28
C 1.4
(-3)
A 		8.3
(-1.5)
A 		2.6
(-2.7)
A 		1.3
(-3)
A 		16.6
(0.3)
A 		29
(3)
M 		28
avr 5.2
(-2.1) 		8.1
(-1.4) 		5
(-2.1) 		1.3
(-3) 		27
(3) 		24.5
(2.4) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3466
Sequence Type Exemplar sequence
Representative Public ID F22B5.6 NCBI
Target Description F22B5.6 /REP_DB=WormBase Gene ID /WP=CE02201 /TR=Q19710 /GB=CAA90358.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063382(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063382 NCBI Caenorhabditis elegans F22B5.6 (F22B5.6) mRNA, complete cds. 11/11 None
F22B5.6 ENSEMBL cdna:known chromosome:CEL140:II:8454599:8456391:-1 gene:F22B5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010409 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8454595-8456388(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22B5.6
Entrez Gene 184810 Entrez gene
SwissProt Q19710 EMBL-EBI
WormBase CE02201 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90358 Hypothetical protein F22B5.6 [Caenorhabditis elegans] ref|NP_495783.1| F22B5.6 [Caenorhabditis elegans] 1.0E-129
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495783.1 3 80-102,117-139,190-212
F22B5.6 3 80-102,117-139,190-212
Sequence
Target Sequence 
>C. ELEGANS:177882_AT
tgtctctcgacgtggatctcacaaaaaaaacgtccatcgtacttcttggaggctcttatc
ctaccaacggttcctgaaagctggtggcttctggcgcaatatcatataattcacgagtct
tccaatattatttcttggaatatgctcaactcatctcgtggcaaaatcgttaatgaaaat
gcaactaatactcattttggattgacatgtgtaaccactgcatttttatgtattcttact
tctttgattatcgtagatattctgttcaaaacacattttaccttccgatatgtggtattt
atgaatatagcagttgttgcgtgcggtttgtttgttaccggatatctactggggcacatt
gttgagatatggtttgcaaaaatgtcaacaatttattcatgtcgtcaattaggtatacaa
acttacttaattacctcgaatagtactggtgaagaagttaggaaactcgaaagtgcagga
tgcgaaactgctatttcatcggagtttaaaaatgtattcttcgacctactaattcaagct
gtcttcattccacttcatattttattgactgcattttcatggacattctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCTCTCGACGTGGATCTCACAAA 257 559 55 Antisense
ATCGTACTTCTTGGAGGCTCTTATC 618 35 90 Antisense
TCTTATCCTACCAACGGTTCCTGAA 534 615 108 Antisense
GTGGCTTCTGGCGCAATATCATATA 200 491 138 Antisense
TATGCTCAACTCATCTCGTGGCAAA 255 657 195 Antisense
CAAAACACATTTTACCTTCCGATAT 659 189 321 Antisense
TTGTTGCGTGCGGTTTGTTTGTTAC 558 705 368 Antisense
TTACCGGATATCTACTGGGGCACAT 565 681 389 Antisense
AATGTATTCTTCGACCTACTAATTC 189 165 565 Antisense
AATTCAAGCTGTCTTCATTCCACTT 653 175 585 Antisense
GACTGCATTTTCATGGACATTCTCT 505 375 621 Antisense
Sequence Source Affymetrix Proprietary Database