[Home] | [Total List]

[177880_at]

Description F46B3.7 /REP_DB=WormBase Gene ID /WP=CE18689 /TR=Q9XV19 /GB=CAB04400.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 42      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 12.9
(-3)
A 		106.4
(3)
A 		83.5
(1.5)
A 		28.7
(-2)
A 		94
B 64.6
(-3)
A 		123.5
(3)
A 		64.2
(-3)
A 		71
(-2.3)
A 		59
C 56.3
(-3)
A 		102.6
(3)
A 		73.7
(-0.7)
A 		69.5
(-1.3)
A 		46
avr 44.6
(-3) 		110.8
(3) 		73.8
(-0.4) 		56.4
(-1.9) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 37.8
(-0.2)
A 		61.8
(2.4)
A 		67
(3)
A 		37.7
(-0.2)
A 		12.1
(-3)
A 		53.6
(1.5)
A 		55
B 68.6
(1.5)
A 		61.9
(0.7)
A 		69.6
(1.7)
A 		33
(-3)
A 		80
(3)
A 		77.7
(2.7)
A 		47
C 41.6
(1.1)
A 		47.2
(1.7)
A 		57.6
(3)
A 		8.3
(-3)
A 		27.7
(-0.6)
A 		53.1
(2.5)
A 		49
avr 49.3
(0.6) 		57
(1.8) 		64.7
(3) 		26.3
(-3) 		39.9
(-0.9) 		61.5
(2.5) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 4.7
(-2.8)
A 		23.1
(3)
A 		21.8
(2.6)
A 		4.2
(-3)
A 		19
B 20.6
(-0.8)
A 		30.5
(3)
A 		14.9
(-3)
A 		15.1
(-2.9)
A 		16
C 18.6
(-0.7)
A 		29.5
(3)
A 		25.7
(1.7)
A 		11.7
(-3)
A 		18
avr 14.6
(-1.5) 		27.7
(3) 		20.8
(0.6) 		10.3
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 7
(-1.9)
A 		22
(3)
A 		14.6
(0.6)
A 		9.6
(-1)
A 		3.6
(-3)
A 		13
(0.1)
A 		18
B 23.9
(0.8)
A 		20.6
(0)
A 		16.9
(-0.9)
A 		8.7
(-3)
A 		32.5
(3)
A 		29
(2.1)
A 		24
C 15.4
(2.1)
A 		14.4
(1.7)
A 		14.7
(1.8)
A 		1.7
(-3)
A 		9
(-0.3)
A 		17.8
(3)
A 		16
avr 15.4
(1) 		19
(2.6) 		15.4
(1) 		6.7
(-3) 		15
(0.8) 		19.9
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14241
Sequence Type Exemplar sequence
Representative Public ID F46B3.7 NCBI
Target Description F46B3.7 /REP_DB=WormBase Gene ID /WP=CE18689 /TR=Q9XV19 /GB=CAB04400.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075577 NCBI Caenorhabditis elegans F46B3.7 (F46B3.7) mRNA, complete cds. 11/11 None
SNAP00000039762 ENSEMBL cdna:SNAP chromosome:CEL140:V:20616171:20616707:-1 11/11 None
GENEFINDER00000039770 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20612435:20621211:-1 11/11 None
F46B3.7 ENSEMBL cdna:known chromosome:CEL140:V:20616171:20616707:-1 gene:F46B3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20616170-20616707(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46B3.7
Entrez Gene 185832 Entrez gene
SwissProt Q9XV19 EMBL-EBI
WormBase CE18689 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04399 Hypothetical protein F46B3.8 [Caenorhabditis elegans] ref|NP_507979.1| F46B3.8 [Caenorhabditis elegans] 6.0E-77
blast CAB04400 Hypothetical protein F46B3.7 [Caenorhabditis elegans] ref|NP_507978.1| F46B3.7 [Caenorhabditis elegans] 2.0E-74
blast CAB04400 Hypothetical protein F46B3.7 [Caenorhabditis elegans] ref|NP_507978.1| F46B3.7 [Caenorhabditis elegans] 3.0E-72
blast CAB04399 Hypothetical protein F46B3.8 [Caenorhabditis elegans] ref|NP_507979.1| F46B3.8 [Caenorhabditis elegans] 9.0E-45
blast AAC68787 Hypothetical protein F54D10.9 [Caenorhabditis elegans] ref|NP_494664.1| F54D10.9 [Caenorhabditis elegans] 5.0E-38
blast CAB07622 Hypothetical protein F54B8.1 [Caenorhabditis elegans] ref|NP_506946.1| F54B8.1 [Caenorhabditis elegans] 6.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.4E-21
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 3.4E-33
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 9.0E-24
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.6E-34
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 3.1E-25
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.4E-21
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 5.9E-31
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 3.0E-17
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:177880_AT
atgctacttttgtttgtgttctactttgtggaagctattgttgcctgtattccaacccaa
gagacggagccaattacaccatcatgttctgcatgcactccaaactatgacactagttgt
atgggatataacatgccatcggctattgattggtgcgctattgttacggtgccatacaca
tttacagccgggacacctgatacatgcacagcaaatctaccatgtcctgctggaaccaaa
cctcaatttgatactggatacggatttgaagatggcgccaatggagctataacttgtgaa
gaaacaggaccaaacatgggaatatggagtgcgacggtcattgctggtgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTACTTTTGTTTGTGTTCTACT 41 43 13 Antisense
ATTGTTGCCTGTATTCCAACCCAAG 157 5 49 Antisense
AGAGACGGAGCCAATTACACCATCA 579 69 72 Antisense
CATGTTCTGCATGCACTCCAAACTA 678 209 95 Antisense
GCCATCGGCTATTGATTGGTGCGCT 403 279 147 Antisense
TGGTGCGCTATTGTTACGGTGCCAT 250 553 163 Antisense
GTGCCATACACATTTACAGCCGGGA 446 477 181 Antisense
TACAGCCGGGACACCTGATACATGC 2 645 195 Antisense
GCACAGCAAATCTACCATGTCCTGC 307 317 218 Antisense
TGTCCTGCTGGAACCAAACCTCAAT 522 557 235 Antisense
AGTGCGACGGTCATTGCTGGTGCAA 601 59 340 Antisense
Sequence Source Affymetrix Proprietary Database