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[177879_at]

Description T06G6.4 /REP_DB=WormBase Gene ID /WP=CE13339 /TR=O62366 /GB=CAB04700.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 56      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 20.2
(-2.9)
A 		19.7
(-3)
A 		47.9
(3)
A 		29.2
(-1)
A 		28
B 21.6
(-2.5)
A 		18.7
(-3)
A 		51.1
(3)
A 		24
(-2)
A 		32
C 57.1
(-0.8)
A 		44.2
(-3)
A 		79.2
(3)
A 		48.7
(-2.2)
A 		35
avr 33
(-2) 		27.5
(-3) 		59.4
(3) 		34
(-1.8) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 81
(0.8)
A 		105.3
(2.1)
A 		123.1
(3)
A 		81.9
(0.8)
A 		83.1
(0.9)
A 		9.9
(-3)
A 		113
B 70
(-0.8)
A 		99
(2)
A 		109.6
(3)
A 		69
(-0.9)
A 		59.7
(-1.8)
A 		47
(-3)
A 		63
C 71.7
(0.9)
A 		87.2
(2.5)
A 		57.7
(-0.6)
A 		91.6
(3)
A 		34.4
(-3)
A 		36
(-2.8)
A 		57
avr 74.2
(0.9) 		97.2
(3) 		96.8
(3) 		80.8
(1.5) 		59.1
(-0.5) 		31
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 7.3
(-0.8)
A 		4.3
(-3)
A 		12.5
(3)
A 		4.3
(-3)
A 		8
B 6.9
(-1.1)
A 		4.6
(-3)
A 		11.8
(3)
A 		5.1
(-2.6)
A 		7
C 18.9
(0.3)
A 		12.7
(-1.6)
A 		27.6
(3)
A 		8.2
(-3)
A 		19
avr 11
(-0.3) 		7.2
(-2.3) 		17.3
(3) 		5.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 14.9
(-0.9)
A 		37.5
(3)
A 		26.8
(1.2)
A 		20.8
(0.1)
A 		25.1
(0.9)
A 		2.4
(-3)
A 		35
B 24.4
(-0.3)
A 		33
(3)
A 		26.6
(0.5)
A 		18.3
(-2.7)
A 		24.2
(-0.4)
A 		17.5
(-3)
A 		16
C 26.6
(3)
A 		26.6
(3)
A 		14.7
(-1.6)
A 		18.4
(-0.2)
A 		11.1
(-3)
A 		12.1
(-2.6)
A 		16
avr 22
(0.1) 		32.4
(3) 		22.7
(0.3) 		19.2
(-0.6) 		20.1
(-0.4) 		10.7
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1969
Sequence Type Exemplar sequence
Representative Public ID T06G6.4 NCBI
Target Description T06G6.4 /REP_DB=WormBase Gene ID /WP=CE13339 /TR=O62366 /GB=CAB04700.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060822(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060822 NCBI Caenorhabditis elegans T06G6.4 (T06G6.4) mRNA, complete cds. 11/11 None
SNAP00000021710 ENSEMBL cdna:SNAP chromosome:CEL140:I:12720377:12722822:-1 9/11 None
GENEFINDER00000021722 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12720377:12722822:-1 10/11 None
T06G6.4 ENSEMBL cdna:known chromosome:CEL140:I:12720377:12723481:-1 gene:T06G6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12720307-12722776(-) 91.64 91.64
Public Domain and Genome References
Gene Title
Ensembl T06G6.4
Entrez Gene 173140 Entrez gene
SwissProt O62366 EMBL-EBI
WormBase CE13339 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04700 Hypothetical protein T06G6.4 [Caenorhabditis elegans] ref|NP_493223.1| T06G6.4 [Caenorhabditis elegans] 0.0
blast CAB04700 Hypothetical protein T06G6.4 [Caenorhabditis elegans] ref|NP_493223.1| T06G6.4 [Caenorhabditis elegans] 1.0E-170
blast CAB04700 Hypothetical protein T06G6.4 [Caenorhabditis elegans] ref|NP_493223.1| T06G6.4 [Caenorhabditis elegans] 1.0E-151
Sequence
Target Sequence 
>C. ELEGANS:177879_AT
aatacagctgcgtcttcaacaaaaaaatcgcgaagcaaaaagagaaaggagaaatgaaga
aacaaattcaagagttgacggagaaagttgagaagaagggagctggaaatattgaggacc
aacttcaagccaagatcaaggacttggaagacgtgcttcgccaaatgacattgaacttga
cgaaagaacaggcaaagtcgaaggcaacctgtgacaaattgcacagaagatccaaaacac
ttggtgaatcccgcgaggaggccagggtgaagctgagtattgccctgaatgaggaaaagg
ccaaataccaggatctattgagagattaccgacgtgttagactggaaggcatggaacctc
ggctagatgaatggtcaggcgaacccattccgcactttgaacaccggaacaacaccaact
cggatgcaatcagaacaactgaaaatgggatcagagaggaccttctattcgattctttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACAGCTGCGTCTTCAACAAAAA 581 171 581 Antisense
GAGGACCAACTTCAAGCCAAGATCA 383 403 694 Antisense
AAGACGTGCTTCGCCAAATGACATT 298 151 728 Antisense
AAACACTTGGTGAATCCCGCGAGGA 528 123 815 Antisense
GGTGAAGCTGAGTATTGCCCTGAAT 461 499 846 Antisense
GAGATTACCGACGTGTTAGACTGGA 530 389 902 Antisense
GGAAGGCATGGAACCTCGGCTAGAT 380 531 924 Antisense
GAATGGTCAGGCGAACCCATTCCGC 512 323 949 Antisense
CCCATTCCGCACTTTGAACACCGGA 516 259 964 Antisense
ACAACACCAACTCGGATGCAATCAG 197 113 989 Antisense
AGAGGACCTTCTATTCGATTCTTTC 203 67 1035 Antisense
Sequence Source Affymetrix Proprietary Database