[Home] | [Total List]

[177876_at]

Description F44G4.3 /REP_DB=WormBase Gene ID /WP=CE02230 /TR=Q20413 /GB=CAA90119.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 81      6grp_total > 53      4grp_total > 24      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 202.5
(-3)
P 		248.4
(-1.8)
P 		276.9
(-1)
P 		427.6
(3)
P 		225
B 152.3
(-3)
P 		269.3
(-0.5)
P 		437.7
(3)
P 		333.6
(0.8)
P 		285
C 249.1
(-3)
P 		312.2
(-0.6)
P 		367.1
(1.5)
P 		407.2
(3)
P 		158
avr 201.3
(-3) 		276.6
(-0.6) 		360.6
(2.1) 		389.5
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 193.5
(-1.9)
P 		294.9
(1.1)
P 		357.7
(3)
P 		253.3
(-0.1)
P 		156.8
(-3)
P 		221.1
(-1.1)
P 		201
B 218.1
(-1.4)
P 		268.7
(1.8)
P 		285.3
(2.8)
P 		192.6
(-3)
P 		287.8
(3)
P 		271.2
(2)
P 		95
C 256.5
(-2.2)
P 		253.8
(-2.4)
P 		254.6
(-2.3)
P 		245.6
(-3)
P 		326.5
(3)
P 		252.5
(-2.5)
P 		81
avr 222.7
(-3) 		272.5
(0.9) 		299.2
(3) 		230.5
(-2.4) 		257
(-0.3) 		248.3
(-1) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 73.7
(3)
P 		53.9
(-3)
P 		72.4
(2.6)
P 		62.6
(-0.4)
P 		20
B 48.6
(-3)
P 		66.5
(-1)
P 		101.4
(3)
P 		71.1
(-0.4)
P 		53
C 82.5
(-1.6)
P 		89.8
(-0.9)
P 		127.9
(3)
P 		68.7
(-3)
P 		59
avr 68.3
(-2.9) 		70.1
(-2.5) 		100.6
(3) 		67.5
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 35.7
(-3)
P 		104.9
(3)
P 		77.9
(0.7)
P 		64.2
(-0.5)
P 		47.3
(-2)
P 		53.8
(-1.4)
P 		69
B 75.9
(-0.7)
P 		89.4
(0.5)
P 		69.3
(-1.3)
P 		51
(-3)
P 		116.9
(3)
P 		101.1
(1.6)
P 		66
C 95.1
(1.9)
P 		77.5
(0)
P 		64.8
(-1.4)
P 		49.4
(-3)
P 		105.6
(3)
P 		84.5
(0.7)
P 		56
avr 68.9
(-0.6) 		90.6
(3) 		70.7
(-0.3) 		54.9
(-3) 		89.9
(2.9) 		79.8
(1.2) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177876_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2773
Sequence Type Exemplar sequence
Representative Public ID F44G4.3 NCBI
Target Description F44G4.3 /REP_DB=WormBase Gene ID /WP=CE02230 /TR=Q20413 /GB=CAA90119.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063519 NCBI Caenorhabditis elegans F44G4.3 (F44G4.3) mRNA, complete cds. 11/11 None
SNAP00000000990 ENSEMBL cdna:SNAP chromosome:CEL140:II:8996977:8997451:-1 11/11 None
GENEFINDER00000000998 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8996977:8997451:-1 11/11 None
F44G4.3 ENSEMBL cdna:known chromosome:CEL140:II:8996977:8997451:-1 gene:F44G4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8996973-8997448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44G4.3
Entrez Gene 185760 Entrez gene
SwissProt Q20413 EMBL-EBI
WormBase CE02230 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90119 Hypothetical protein F44G4.3 [Caenorhabditis elegans] ref|NP_495920.1| F44G4.3 [Caenorhabditis elegans] 1.0E-59
blast CAE59782 Hypothetical protein CBG03234 [Caenorhabditis briggsae] 9.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495920.1 1 34-56
F44G4.3 1 34-56
SNAP00000000990 1 34-56
GENEFINDER00000000998 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:177876_AT
gtgatgagttcaaaaccgacagggaaagccaattggaaaataaaattccacaaaattctg
tcatatcctatgaaaagaactggtcctgcaattgtagcttcaacgcttctctacatagta
atgtacaatgttggagtccggtggtggaaaggcgacaaacatccagtaaatcggtttatg
tggaagatacaagaacaagaaggaaggctagatcctactcttcaagcgaaaaaacaagtt
gttctttcctaccaagaagagcgagtttatcgtccacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATGAGTTCAAAACCGACAGGGA 90 483 34 Antisense
TTCCACAAAATTCTGTCATATCCTA 421 697 79 Antisense
TCCTATGAAAAGAACTGGTCCTGCA 583 591 99 Antisense
GGTCCTGCAATTGTAGCTTCAACGC 501 501 115 Antisense
GCTTCAACGCTTCTCTACATAGTAA 83 305 130 Antisense
GTACAATGTTGGAGTCCGGTGGTGG 113 461 156 Antisense
GGTGGAAAGGCGACAAACATCCAGT 418 487 176 Antisense
GAAGGAAGGCTAGATCCTACTCTTC 626 223 232 Antisense
GCTAGATCCTACTCTTCAAGCGAAA 518 303 240 Antisense
CAAGTTGTTCTTTCCTACCAAGAAG 316 183 268 Antisense
AGAAGAGCGAGTTTATCGTCCACGA 8 75 288 Antisense
Sequence Source Affymetrix Proprietary Database