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[177875_at]

Description F52B5.5 /REP_DB=WormBase Gene ID /WP=CE05720 /TR=Q20646 /GB=CAA99857.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 94      6grp_total > 86      4grp_total > 01      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 315
1 2 3 4 range
A 276.2
(-3)
P 		282.2
(-2.8)
P 		363.3
(-0.7)
P 		502.4
(3)
P 		226
B 355
(0.9)
P 		299.4
(-0.4)
P 		187.1
(-3)
P 		446.9
(3)
P 		260
C 275.7
(-2.6)
P 		261.6
(-3)
P 		358.3
(-0.6)
P 		502.1
(3)
P 		241
avr 302.3
(-2.4) 		281.1
(-3) 		302.9
(-2.4) 		483.8
(3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 836
1 2 3 4 5 6 range
A 357.9
(-2.3)
P 		282.5
(-3)
P 		391.5
(-2)
P 		547.1
(-0.5)
P 		582.3
(-0.2)
P 		929.4
(3)
P 		647
B 293.7
(-3)
P 		365.4
(-2.3)
P 		351.4
(-2.4)
P 		527.2
(-0.7)
P 		591.2
(-0)
P 		896.8
(3)
P 		603
C 242
(-3)
P 		312
(-2.5)
P 		414.1
(-1.8)
P 		578
(-0.6)
P 		568.8
(-0.7)
P 		1077.7
(3)
P 		836
avr 297.9
(-3) 		320
(-2.8) 		385.7
(-2.2) 		550.8
(-0.7) 		580.8
(-0.5) 		968
(3) 		670
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 100.6
(3)
P 		61.3
(-3)
P 		95
(2.1)
P 		73.5
(-1.1)
P 		39
B 113.2
(3)
P 		73.9
(-0.4)
P 		43.4
(-3)
P 		95.2
(1.5)
P 		70
C 91.3
(-1.1)
P 		75.2
(-3)
P 		124.9
(3)
P 		84.7
(-1.9)
P 		50
avr 101.7
(3) 		70.1
(-3) 		87.8
(0.4) 		84.5
(-0.3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 66
(-3)
P 		100.5
(-1.7)
P 		85.3
(-2.3)
P 		138.8
(-0.3)
P 		175.7
(1.1)
P 		226.3
(3)
P 		160
B 102.2
(-2.6)
P 		121.6
(-2.1)
P 		85.3
(-3)
P 		139.6
(-1.7)
P 		240.2
(0.7)
P 		334.4
(3)
P 		249
C 89.7
(-3)
P 		95.2
(-2.9)
P 		105.4
(-2.7)
P 		116.2
(-2.4)
P 		184
(-0.9)
P 		360.8
(3)
P 		271
avr 86
(-3) 		105.8
(-2.5) 		92
(-2.8) 		131.5
(-1.8) 		200
(0.1) 		307.2
(3) 		221
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177875_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2426
Sequence Type Exemplar sequence
Representative Public ID F52B5.5 NCBI
Target Description F52B5.5 /REP_DB=WormBase Gene ID /WP=CE05720 /TR=Q20646 /GB=CAA99857.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026307(11), NM_001026308(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026307 NCBI Caenorhabditis elegans C.Elegans P-53-like protein family member (cep-1) (cep-1) mRNA, complete cds. 11/11 None
NM_001026308 NCBI Caenorhabditis elegans C.Elegans P-53-like protein family member (cep-1) (cep-1) mRNA, complete cds. 11/11 None
SNAP00000039362 ENSEMBL cdna:SNAP chromosome:CEL140:I:8332425:8336831:1 11/11 None
GENEFINDER00000039364 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8332425:8336831:1 11/11 None
F52B5.5.2 ENSEMBL cdna:known chromosome:CEL140:I:8332244:8336943:1 gene:F52B5.5 11/11 None
F52B5.5.1 ENSEMBL cdna:known chromosome:CEL140:I:8332417:8336974:1 gene:F52B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8333548-8336762(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52B5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99857 Hypothetical protein F52B5.5a [Caenorhabditis elegans] gb|AAL28139.1| transcription factor CEP-1 [Caenorhabditis elegans] ref|NP_001021478.1| C.Elegans P-53-like protein family member (cep-1) [Caenorhabditis elegans] 0.0
blast 1T4W Chain , Structural Differences In The Dna Binding Domains Of Human P53 And Its C. Elegans Ortholog Cep-1: Structure Of C. Elegans Cep-1 1.0E-112
Sequence
Target Sequence 
>C. ELEGANS:177875_AT
gttcaacgtgaccaatactactgcacagatggaaccatcaacttcatattcatctccatc
aaacagtaataatcggaagagatttttgaatgagtgtgattctccaaataatgattatac
aatgatgcacagaactccaccagtaacaggttatgcaagtcgtcttcatggatgcgttcc
tccgattgaaactgaacacgaaaactgtcaatctccgtcgatgaagagaagtcgctgtac
caattattcgtttagaacgctcactctgtcgactgctgagtatacaaaagtcgtcgaatt
tctggcacgcgaagcaaaagttcccagatacacttgggttccgacgcaagtagtctccca
tatattgccaactgaaggacttgaaagattcctcaccgctataaaagcagggcacgattc
agtgttgttcaatgcaaacggaatttatacaatgggggatatgattagagaattcgagaa
acataatgacatcttcgaaagaattggtatcgattcttcgaaattgtcgaaatactacga
agcgtttctcagcttttaccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAACGTGACCAATACTACTGCA 276 445 711 Antisense
CAATGATGCACAGAACTCCACCAGT 355 183 830 Antisense
TTCATGGATGCGTTCCTCCGATTGA 627 687 875 Antisense
AAAACTGTCAATCTCCGTCGATGAA 669 129 911 Antisense
AAGTCGCTGTACCAATTATTCGTTT 28 159 939 Antisense
TTCGTTTAGAACGCTCACTCTGTCG 557 687 957 Antisense
AAGTCGTCGAATTTCTGGCACGCGA 697 155 998 Antisense
TGGGTTCCGACGCAAGTAGTCTCCC 669 551 1045 Antisense
GTAGTCTCCCATATATTGCCAACTG 235 457 1060 Antisense
GAAAGATTCCTCACCGCTATAAAAG 520 359 1093 Antisense
CGAAGCGTTTCTCAGCTTTTACCGC 26 253 1248 Antisense
Sequence Source Affymetrix Proprietary Database