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[177874_s_at]

Description T13F2.9 /REP_DB=WormBase Gene ID /WP=CE13635 /TR=Q94052 /GB=CAB03360.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 26      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 47.6
(-0.6)
A 		37.3
(-3)
A 		63
(3)
A 		52.4
(0.5)
A 		26
B 6.5
(-3)
A 		48.8
(3)
A 		9.9
(-2.5)
A 		23.6
(-0.6)
A 		42
C 30.8
(-3)
A 		57.6
(0.9)
A 		30.6
(-3)
A 		71.8
(3)
P 		41
avr 28.3
(-3) 		47.9
(2.6) 		34.5
(-1.2) 		49.3
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 907
1 2 3 4 5 6 range
A 36.5
(-2.9)
A 		21.1
(-3)
A 		39.6
(-2.9)
A 		75.3
(-2.6)
P 		688.8
(1.5)
P 		909.5
(3)
P 		888
B 27.3
(-2.9)
A 		18.7
(-3)
A 		43.2
(-2.8)
A 		76.1
(-2.5)
A 		580.2
(1.9)
P 		701.5
(3)
P 		683
C 2.6
(-3)
A 		48.1
(-2.7)
A 		49.2
(-2.7)
A 		79
(-2.4)
P 		510.1
(0.8)
P 		812.1
(3)
P 		810
avr 22.1
(-3) 		29.3
(-2.9) 		44
(-2.8) 		76.8
(-2.6) 		593
(1.4) 		807.7
(3) 		786
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 17.3
(3)
A 		8.1
(-2.8)
A 		16.5
(2.5)
A 		7.7
(-3)
A 		10
B 2.1
(-3)
A 		12.1
(3)
A 		2.3
(-2.9)
A 		5
(-1.3)
A 		10
C 10.2
(-3)
A 		16.6
(3)
A 		10.7
(-2.5)
A 		12.1
(-1.2)
P 		6
avr 9.9
(-0.6) 		12.3
(3) 		9.8
(-0.8) 		8.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 6.7
(-3)
A 		7.5
(-3)
A 		8.6
(-2.9)
A 		19.1
(-2.7)
P 		207.8
(2.6)
P 		221.4
(3)
P 		215
B 9.5
(-2.9)
A 		6.2
(-3)
A 		10.5
(-2.9)
A 		20.1
(-2.7)
A 		235.7
(2.4)
P 		261.6
(3)
P 		255
C 1
(-3)
A 		14.7
(-2.7)
A 		12.5
(-2.7)
A 		15.9
(-2.7)
P 		165.1
(0.6)
P 		271.9
(3)
P 		271
avr 5.7
(-3) 		9.5
(-2.9) 		10.5
(-2.9) 		18.4
(-2.7) 		202.9
(1.8) 		251.6
(3) 		246
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177874_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9894
Sequence Type Exemplar sequence
Representative Public ID T13F2.9 NCBI
Target Description T13F2.9 /REP_DB=WormBase Gene ID /WP=CE13635 /TR=Q94052 /GB=CAB03360.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069340(11), NM_069379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069340 NCBI Caenorhabditis elegans T13F2.9 (T13F2.9) mRNA, complete cds. 11/11 None
NM_069379 NCBI Caenorhabditis elegans Sperm-Specific family, class S family member (sss-1) (sss-1) mRNA, complete cds. 11/11 A 
SNAP00000041532 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9892741:9893669:-1 11/11 None
GENEFINDER00000041540 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9892741:9893669:-1 11/11 None
GENEFINDER00000043491 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9768031:9768958:1 9/11 None
T13F2.9 ENSEMBL cdna:known chromosome:CEL140:IV:9767999:9768958:1 gene:T13F2.9 11/11 None
F32B6.5 ENSEMBL cdna:known chromosome:CEL140:IV:9892713:9893669:-1 gene:F32B6.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074156 1/11 Cross Hyb Matching Probes None
SNAP00000043473 3/11 Cross Hyb Matching Probes None
SNAP00000043474 8/11 Cross Hyb Matching Probes None
SNAP00000011446 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011456 1/11 Cross Hyb Matching Probes None
F47B8.11 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9768036-9768964(+) 97.14 100.0
chrIV:9892746-9893675(-) 89.58 92.45
Public Domain and Genome References
Gene Title

Gene Symbol sss-1
Ensembl T13F2.9
F32B6.5
Entrez Gene 177813 Entrez gene
177843 Entrez gene
SwissProt Q9XVP7 EMBL-EBI
Q94052 EMBL-EBI
WormBase CE09860 Wormbase
CE13635 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03036 Hypothetical protein F32B6.5 [Caenorhabditis elegans] ref|NP_501780.1| Sperm-Specific family, class S family member (sss-1) [Caenorhabditis elegans] 1.0E-134
blast CAB03360 Hypothetical protein T13F2.9 [Caenorhabditis elegans] ref|NP_501741.1| T13F2.9 [Caenorhabditis elegans] 1.0E-124
blast CAB03036 Hypothetical protein F32B6.5 [Caenorhabditis elegans] ref|NP_501780.1| Sperm-Specific family, class S family member (sss-1) [Caenorhabditis elegans] 1.0E-105
blast CAB03360 Hypothetical protein T13F2.9 [Caenorhabditis elegans] ref|NP_501741.1| T13F2.9 [Caenorhabditis elegans] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:177874_S_AT
aaggttcaatcttgcccagttgttccaacgactgcaagagttacagaagagatcaagaag
agcattagctgcccattgttggctctccacgctgatcaaacgatcgagatggccatctcc
ccaaaggtgaatggattgtttgctgcatcgtccacaacatctacggcatcacttttcgga
aagtacgagggattttttgagaaaacggaggttgctacggaagatgtgaacacttttttt
tggaattctccagctcatccatctttcccacaacttccagttttcgtcaaatctccaatc
gactcgatgaaaatatatggagcagttaatcataacttcaatatttctgaagatggtaag
tttttttttgaaagtagtttttttaaatatttattaattctagaaacactcccatgcacg
gctcaatctgtttcatctccaatttctccatcttctaccacctcggattcttcaagtgaa
acaatcattcttggacctggacatcttcttcaggaagtctacttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTTCAATCTTGCCCAGTTGTTC 672 159 151 Antisense
TTCAATCTTGCCCAGTTGTTCCAAC 416 685 155 Antisense
TCAAGAAGAGCATTAGCTGCCCATT 602 629 203 Antisense
GAAAACGGAGGTTGCTACGGAAGAT 171 353 351 Antisense
TCCCACAACTTCCAGTTTTCGTCAA 178 597 416 Antisense
CTTCCAGTTTTCGTCAAATCTCCAA 327 219 424 Antisense
GTCAAATCTCCAATCGACTCGATGA 334 465 436 Antisense
CTCAATCTGTTTCATCTCCAATTTC 559 227 572 Antisense
ATCATTCTTGGACCTGGACATCTTC 550 29 634 Antisense
TCTTGGACCTGGACATCTTCTTCAG 74 619 639 Antisense
ATCTTCTTCAGGAAGTCTACTTGCA 415 31 653 Antisense
Sequence Source Affymetrix Proprietary Database