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[177873_at]

Description F21D9.4 /REP_DB=WormBase Gene ID /WP=CE18630 /TR=Q9XV71 /GB=CAB04163.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 51.2
(-3)
A 		145.6
(2.8)
P 		149.5
(3)
A 		140.1
(2.4)
A 		98
B 61.1
(-3)
A 		149.7
(3)
A 		115.3
(0.7)
A 		85.3
(-1.4)
A 		89
C 44.3
(-3)
A 		118.5
(1.9)
A 		135.9
(3)
M 		74.8
(-1)
A 		92
avr 52.2
(-3) 		137.9
(3) 		133.6
(2.7) 		100.1
(0.4) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 138.8
(0.1)
A 		156.6
(0.8)
A 		171
(1.4)
P 		211.3
(3)
P 		128.7
(-0.3)
A 		59.2
(-3)
A 		152
B 182.3
(2.2)
A 		124.8
(0.1)
A 		203.4
(3)
M 		165.9
(1.6)
A 		91.3
(-1.2)
A 		42.8
(-3)
A 		161
C 97.5
(-0.9)
A 		150
(2.3)
A 		162.3
(3)
M 		147.5
(2.1)
A 		76.4
(-2.1)
A 		61.5
(-3)
A 		101
avr 139.5
(1.1) 		143.8
(1.3) 		178.9
(3) 		174.9
(2.8) 		98.8
(-0.9) 		54.5
(-3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 18.7
(-3)
A 		31.6
(0.8)
P 		39.1
(3)
A 		20.5
(-2.5)
A 		20
B 19.5
(-2.6)
A 		37
(3)
A 		26.7
(-0.3)
A 		18.2
(-3)
A 		19
C 14.7
(-2.6)
A 		34.1
(0.7)
A 		47.4
(3)
M 		12.6
(-3)
A 		35
avr 17.6
(-2.9) 		34.2
(2) 		37.7
(3) 		17.1
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 25.6
(-1.4)
A 		55.7
(3)
A 		37.2
(0.3)
P 		53.6
(2.7)
P 		38.8
(0.5)
A 		14.4
(-3)
A 		41
B 63.4
(3)
A 		41.6
(0.2)
A 		49.4
(1.2)
M 		43.9
(0.5)
A 		37.1
(-0.3)
A 		15.9
(-3)
A 		48
C 36.1
(0.7)
A 		45.8
(3)
A 		41.3
(1.9)
M 		29.7
(-0.8)
A 		24.7
(-2)
A 		20.6
(-3)
A 		25
avr 41.7
(1.8) 		47.7
(3) 		42.6
(2) 		42.4
(2) 		33.5
(0.2) 		17
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177873_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14080
Sequence Type Exemplar sequence
Representative Public ID F21D9.4 NCBI
Target Description F21D9.4 /REP_DB=WormBase Gene ID /WP=CE18630 /TR=Q9XV71 /GB=CAB04163.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075344 NCBI Caenorhabditis elegans F21D9.4 (F21D9.4) mRNA, complete cds. 11/11 None
F21D9.4 ENSEMBL cdna:known chromosome:CEL140:V:19256488:19259290:1 gene:F21D9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022440 5/11 Cross Hyb Matching Probes None
GENEFINDER00000022452 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19256487-19259290(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21D9.4
Entrez Gene 184774 Entrez gene
SwissProt Q9XV71 EMBL-EBI
WormBase CE18630 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04163 Hypothetical protein F21D9.4 [Caenorhabditis elegans] ref|NP_507745.1| F21D9.4 [Caenorhabditis elegans] 0.0
blast CAB04995 Hypothetical protein ZK228.3 [Caenorhabditis elegans] ref|NP_507614.1| ZK228.3 [Caenorhabditis elegans] 1.0E-133
blast CAE56201 Hypothetical protein CBG23825 [Caenorhabditis briggsae] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:177873_AT
attgcgttttgacggcagcagccgacatgtctccaaaatacgctaaaacctttgggttta
cggaaatgttggcatattggcaaatggaagcaaacattgagcccaagaaaatgaaaattc
cagaaaatttagtgacagagtatactacaaaggactggagagaagtaaatgctgagcagc
tggaagcctatgatttgacgatttgcccaagagcccggcggaaaattatcaggccctggt
ttgagcaagaccagagttatactcgggtggcattcgaaagaaatcaaaatatcgttggct
actgtaccatccgagtcatcaacctcaatcggctttgcactgccccattttatgctgaaa
atgtgcatgttgctgagcaattgctggcgggtatcaggggtatgggaatcataccgaatt
tccaaaatttcgagaaaatcatcttctggtacccagaggtcaataaggatgttgaaagac
tccttcaaaaattcgcacctgacggcggattttctgtgcacgtggacttccgtactcaat
tcacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCGTTTTGACGGCAGCAGCCGA 439 5 335 Antisense
GCCGACATGTCTCCAAAATACGCTA 531 283 355 Antisense
AAGCCTATGATTTGACGATTTGCCC 501 147 518 Antisense
TTGCCCAAGAGCCCGGCGGAAAATT 158 699 537 Antisense
TATCGTTGGCTACTGTACCATCCGA 362 657 624 Antisense
CCATCCGAGTCATCAACCTCAATCG 461 271 641 Antisense
TTGCACTGCCCCATTTTATGCTGAA 128 705 669 Antisense
AGACTCCTTCAAAAATTCGCACCTG 648 69 811 Antisense
TTCGCACCTGACGGCGGATTTTCTG 210 697 826 Antisense
GGATTTTCTGTGCACGTGGACTTCC 537 509 841 Antisense
GTGGACTTCCGTACTCAATTCACGA 180 491 856 Antisense
Sequence Source Affymetrix Proprietary Database