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[177870_at]

Description C02F4.4 /REP_DB=WormBase Gene ID /WP=CE07855 /TR=Q93185 /GB=CAB02720.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 81      6grp_total > 81      4grp_total > 49      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1544
1 2 3 4 range
A 77.1
(-3)
A 		1231.3
(1.7)
P 		1562.7
(3)
P 		201.6
(-2.5)
A 		1486
B 19.1
(-3)
A 		1296.5
(2.7)
P 		1374
(3)
P 		68.6
(-2.8)
A 		1355
C 91.3
(-3)
A 		1294.8
(2)
P 		1539.1
(3)
P 		164.2
(-2.7)
A 		1448
avr 62.5
(-3) 		1274.2
(2.1) 		1491.9
(3) 		144.8
(-2.7) 		1429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2414
1 2 3 4 5 6 range
A 197.2
(-3)
A 		909.1
(-1.2)
P 		582.2
(-2)
P 		2595.5
(3)
P 		1886
(1.2)
P 		438.9
(-2.4)
P 		2398
B 191.2
(-3)
P 		797.5
(-1)
P 		491.3
(-2)
P 		1974.7
(3)
P 		1883.4
(2.7)
P 		466.7
(-2.1)
P 		1784
C 181.3
(-3)
A 		899.1
(-1)
P 		592.1
(-1.9)
P 		2364.6
(3)
P 		1761
(1.3)
P 		382.6
(-2.4)
P 		2183
avr 189.9
(-3) 		868.6
(-1.1) 		555.2
(-2) 		2311.6
(3) 		1843.5
(1.7) 		429.4
(-2.3) 		2122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 530
1 2 3 4 range
A 28.1
(-3)
A 		267.3
(0.8)
P 		408.5
(3)
P 		29.5
(-3)
A 		380
B 6.1
(-3)
A 		320.2
(3)
P 		318.4
(3)
P 		14.6
(-2.8)
A 		314
C 30.2
(-3)
A 		372.3
(1.1)
P 		536.4
(3)
P 		27.7
(-3)
A 		509
avr 21.5
(-3) 		319.9
(1.5) 		421.1
(3) 		23.9
(-3) 		400

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 729
1 2 3 4 5 6 range
A 36.4
(-3)
A 		323.3
(-0.2)
P 		126.8
(-2.1)
P 		658.3
(3)
P 		569.1
(2.1)
P 		106.9
(-2.3)
P 		622
B 66.5
(-3)
P 		265.5
(-1.3)
P 		119.3
(-2.5)
P 		523
(0.9)
P 		765.2
(3)
P 		174
(-2.1)
P 		699
C 67.2
(-3)
A 		274.4
(-0.5)
P 		150.7
(-2)
P 		475.5
(1.9)
P 		569.8
(3)
P 		128.1
(-2.3)
P 		503
avr 56.7
(-3) 		287.7
(-0.6) 		132.3
(-2.2) 		552.3
(2.1) 		634.7
(3) 		136.3
(-2.2) 		578
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177870_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10022
Sequence Type Exemplar sequence
Representative Public ID C02F4.4 NCBI
Target Description C02F4.4 /REP_DB=WormBase Gene ID /WP=CE07855 /TR=Q93185 /GB=CAB02720.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069540 NCBI Caenorhabditis elegans C02F4.4 (C02F4.4) mRNA, complete cds. 11/11 None
SNAP00000033615 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10513956:10515067:-1 11/11 None
GENEFINDER00000033617 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10513956:10515067:-1 11/11 None
C02F4.4 ENSEMBL cdna:known chromosome:CEL140:IV:10513956:10515067:-1 gene:C02F4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10513961-10515073(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02F4.4
Entrez Gene 182119 Entrez gene
SwissProt Q93185 EMBL-EBI
WormBase CE07855 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02720 Hypothetical protein C02F4.4 [Caenorhabditis elegans] ref|NP_501941.1| C02F4.4 [Caenorhabditis elegans] 1.0E-100
blast CAE63801 Hypothetical protein CBG08345 [Caenorhabditis briggsae] 2.0E-76
Sequence
Target Sequence 
>C. ELEGANS:177870_AT
gaaatcgctgattttcctaactcttctcgttgtcactattcactgtttaactccaccaga
aggtctccgacgagccaaacaagttggaaatggaaatggagagccaactggtgttgaacc
accaccaaacttgcagttgagatcacgaatgatggctgcaatgaattcgcatactcaacc
aatcgctgccgaaaaagccaatattttcaatcaaccactaattttgacaaagaacaagaa
gatgtcaaagccagttgcaaaggctattattactcaagccatcactgcatcaactgagat
tccagtaggaaaagaagagaaagtcacatcgccaactacatctctgtccccagaagacat
tagaaagaaattcactagcgttggcgatgaaaaagtgaatctgaacatccgtccggtgct
gaaaaccaattttgtcgatgcaaacggaaaagttgtgagagacgttgtttcagtcccaat
tcgtgtctccgatgggcaaatcaactctattccgaaaaacgccaaaaaagcaacatccag
ctcggccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCGCTGATTTTCCTAACTCTT 466 361 15 Antisense
TTCTCGTTGTCACTATTCACTGTTT 556 691 38 Antisense
TTAACTCCACCAGAAGGTCTCCGAC 100 683 61 Antisense
ATTCGCATACTCAACCAATCGCTGC 398 9 179 Antisense
TTACTCAAGCCATCACTGCATCAAC 267 683 284 Antisense
AGAAAGTCACATCGCCAACTACATC 155 73 332 Antisense
CTACATCTCTGTCCCCAGAAGACAT 213 227 350 Antisense
TCTGAACATCCGTCCGGTGCTGAAA 148 609 414 Antisense
GAGAGACGTTGTTTCAGTCCCAATT 567 393 471 Antisense
GTCCCAATTCGTGTCTCCGATGGGC 559 475 487 Antisense
AAAAAAGCAACATCCAGCTCGGCCG 340 127 538 Antisense
Sequence Source Affymetrix Proprietary Database