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[177867_at]

Description F23B2.7 /REP_DB=WormBase Gene ID /WP=CE17698 /TR=O02249 /GB=CAB05186.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2.5
(-2.9)
A 		8.6
(-1.1)
A 		21.9
(3)
A 		2.2
(-3)
A 		20
B 0.6
(-3)
A 		4.1
(3)
A 		2.2
(-0.3)
A 		1.6
(-1.3)
A 		4
C 3.3
(-2.6)
A 		2.2
(-2.9)
A 		1.8
(-3)
A 		23.4
(3)
A 		22
avr 2.1
(-3) 		5
(-0.5) 		8.6
(2.6) 		9.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 3.7
(-2.7)
A 		2.2
(-2.9)
A 		9.5
(-2.1)
A 		1.1
(-3)
A 		4
(-2.7)
A 		57.2
(3)
A 		56
B 2
(-2.8)
A 		0.6
(-3)
A 		3.7
(-2.6)
A 		1.3
(-2.9)
A 		43.7
(3)
A 		26.1
(0.5)
A 		43
C 0.8
(-3)
A 		1.6
(-2.9)
A 		2.9
(-2.7)
A 		6.8
(-2.1)
A 		39
(3)
A 		24.5
(0.7)
A 		38
avr 2.2
(-2.9) 		1.5
(-3) 		5.4
(-2.3) 		3.1
(-2.7) 		28.9
(1.8) 		35.9
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.9
(-2.3)
A 		1.9
(-1.2)
A 		5.7
(3)
A 		0.3
(-3)
A 		5
B 0.2
(-3)
A 		1
(3)
A 		0.5
(-0.8)
A 		0.3
(-2.3)
A 		1
C 1.1
(-2.1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		3.9
(3)
A 		3
avr 0.7
(-3) 		1.2
(-1.1) 		2.3
(3) 		1.5
(0) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.7
(-2.8)
A 		0.8
(-2.8)
A 		2.1
(-2.2)
A 		0.3
(-3)
A 		1.2
(-2.6)
A 		13.9
(3)
A 		14
B 0.7
(-2.8)
A 		0.2
(-3)
A 		0.9
(-2.8)
A 		0.3
(-3)
A 		17.7
(3)
A 		9.7
(0.3)
A 		18
C 0.3
(-3)
A 		0.5
(-2.9)
A 		0.7
(-2.8)
A 		1.4
(-2.5)
A 		12.6
(3)
A 		8.2
(0.9)
A 		12
avr 0.6
(-2.9) 		0.5
(-3) 		1.2
(-2.6) 		0.7
(-2.9) 		10.5
(2.9) 		10.6
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177867_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8850
Sequence Type Exemplar sequence
Representative Public ID F23B2.7 NCBI
Target Description F23B2.7 /REP_DB=WormBase Gene ID /WP=CE17698 /TR=O02249 /GB=CAB05186.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069194 NCBI Caenorhabditis elegans F23B2.7 (F23B2.7) mRNA, complete cds. 11/11 None
SNAP00000024646 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9150759:9151994:1 9/11 None
GENEFINDER00000024657 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9150759:9151994:1 11/11 None
F23B2.7 ENSEMBL cdna:known chromosome:CEL140:IV:9150472:9151994:1 gene:F23B2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9150482-9152000(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23B2.7
Entrez Gene 177739 Entrez gene
SwissProt O02249 EMBL-EBI
WormBase CE17698 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05186 Hypothetical protein F23B2.7 [Caenorhabditis elegans] ref|NP_501595.1| F23B2.7 [Caenorhabditis elegans] 2.0E-89
blast CAB05186 Hypothetical protein F23B2.7 [Caenorhabditis elegans] ref|NP_501595.1| F23B2.7 [Caenorhabditis elegans] 2.0E-76
blast NP_741407 C55C3.6 [Caenorhabditis elegans] gb|AAL27232.1| Hypothetical protein C55C3.6 [Caenorhabditis elegans] 1.0E-71
blast NP_741407 C55C3.6 [Caenorhabditis elegans] gb|AAL27232.1| Hypothetical protein C55C3.6 [Caenorhabditis elegans] 6.0E-60
blast T29187 hypothetical protein C55C3.3 - Caenorhabditis elegans 7.0E-59
blast CAB05186 Hypothetical protein F23B2.7 [Caenorhabditis elegans] ref|NP_501595.1| F23B2.7 [Caenorhabditis elegans] 1.0E-52
blast T29187 hypothetical protein C55C3.3 - Caenorhabditis elegans 4.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501595.1 1 15-37
F23B2.7 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:177867_AT
gcagaagtctgcaattggcaatggaactcaacaggttgaagaaaagccaaaaacgcctgg
aaacgggaaaaacggcaaagcgtattctaagaaaaagtcgaaaaagacaaaatcggagaa
gtcacagtcgagcaataaggaaggtgctcctatgaaaccgatggatccgatacgtgacga
tccaaatgatgatccaccgcaagcacatccatcttttactgtattgaaggctgaagagtg
caataaaatggatgttacgattgaagatttcggaaatcctgcaattcacgaccgtgtttc
tcgagccgccgccaccgatatgattttcgacccaaaagtgattacgtataagggaaacgt
tgatgatggaaaggacaagaaagatatggtagatgtggaaaaggatattctggcggcttg
cgaaaagcatgacgctaagtttagtcgaaacgggaaagtcgtgaaaacggttgaatcgga
aaaatcgaaggcggcgccggcggatcagcgagttaaaatgaagccggatggatgtgttct
attcgagactagagagctgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGAAGTCTGCAATTGGCAATGGA 288 311 252 Antisense
TGGCAATGGAACTCAACAGGTTGAA 389 539 267 Antisense
AACCGATGGATCCGATACGTGACGA 430 143 407 Antisense
AAATGATGATCCACCGCAAGCACAT 166 119 435 Antisense
GCAAGCACATCCATCTTTTACTGTA 441 319 450 Antisense
GATTTTCGACCCAAAAGTGATTACG 207 429 573 Antisense
AAGGATATTCTGGCGGCTTGCGAAA 144 161 652 Antisense
AAAATCGAAGGCGGCGCCGGCGGAT 499 133 732 Antisense
GCGCCGGCGGATCAGCGAGTTAAAA 290 287 745 Antisense
GCCGGATGGATGTGTTCTATTCGAG 66 283 774 Antisense
TCTATTCGAGACTAGAGAGCTGCCG 414 613 789 Antisense
Sequence Source Affymetrix Proprietary Database