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[177866_at]

Description T13F2.4 /REP_DB=WormBase Gene ID /WP=CE13625 /TR=Q94047 /GB=CAB03355.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 19.7
(-3)
P 		36.4
(-0.4)
A 		31.6
(-1.1)
A 		57.8
(3)
A 		38
B 28.7
(2)
A 		31.9
(3)
A 		20.9
(-0.3)
A 		11.9
(-3)
A 		20
C 21.2
(-3)
A 		38.9
(1.1)
M 		30.6
(-0.8)
A 		47.4
(3)
A 		26
avr 23.2
(-3) 		35.7
(1.7) 		27.7
(-1.3) 		39
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 25.9
(-0.9)
A 		20.9
(-1.3)
P 		72.6
(3)
P 		41.5
(0.4)
P 		1
(-3)
A 		4.3
(-2.7)
A 		72
B 17.5
(0.5)
A 		22.2
(1.5)
A 		29.1
(3)
P 		1.2
(-3)
A 		28
(2.8)
P 		6.6
(-1.8)
A 		28
C 27.4
(3)
A 		19.3
(-1.3)
A 		16
(-3)
A 		23.1
(0.7)
A 		21.5
(-0.1)
A 		18
(-1.9)
A 		11
avr 23.6
(-0.2) 		20.8
(-0.7) 		39.2
(3) 		21.9
(-0.5) 		16.8
(-1.5) 		9.6
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 7.2
(-3)
P 		7.9
(0.2)
A 		8.3
(2.1)
A 		8.5
(3)
A 		1
B 9.2
(3)
A 		7.9
(1.8)
A 		4.8
(-0.9)
A 		2.5
(-3)
A 		7
C 7
(-3)
A 		11.2
(3)
M 		10.7
(2.3)
A 		8
(-1.6)
A 		4
avr 7.8
(0.3) 		9
(3) 		7.9
(0.6) 		6.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.8
(-1.3)
A 		7.4
(-0.3)
P 		15.8
(3)
P 		10.5
(0.9)
P 		0.3
(-3)
A 		1
(-2.7)
A 		16
B 6.1
(0.1)
A 		7.4
(0.8)
A 		7.1
(0.7)
P 		0.3
(-3)
A 		11.4
(3)
P 		2.5
(-1.8)
A 		11
C 10.1
(3)
A 		5.9
(-1.2)
A 		4.1
(-3)
A 		4.7
(-2.4)
A 		7
(-0.1)
A 		6
(-1.1)
A 		6
avr 7
(0.9) 		6.9
(0.8) 		9
(3) 		5.2
(-0.9) 		6.2
(0.1) 		3.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177866_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9448
Sequence Type Exemplar sequence
Representative Public ID T13F2.4 NCBI
Target Description T13F2.4 /REP_DB=WormBase Gene ID /WP=CE13625 /TR=Q94047 /GB=CAB03355.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069346 NCBI Caenorhabditis elegans T13F2.4 (T13F2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000043486 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9789785:9790864:1 11/11 None
T13F2.4 ENSEMBL cdna:known chromosome:CEL140:IV:9789439:9790864:1 gene:T13F2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9789444-9790870(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13F2.4
Entrez Gene 188476 Entrez gene
SwissProt Q94047 EMBL-EBI
WormBase CE13625 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03355 Hypothetical protein T13F2.4 [Caenorhabditis elegans] ref|NP_501747.1| T13F2.4 [Caenorhabditis elegans] 1.0E-115
blast CAB03355 Hypothetical protein T13F2.4 [Caenorhabditis elegans] ref|NP_501747.1| T13F2.4 [Caenorhabditis elegans] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:177866_AT
tagttgaaactattgcacacgaaatgaaaatatcagaaattatggatttatcatttcgat
atttgaatacattggaaattgaggtgaacggcgagaaaatgacagttttcaacattatat
cgtttattgaatatcttggaacatacaatatttgcatcaactatgcagaattcaaaaatt
ttccaacggatggagttcttcgaaaagctttatttgaagctgtgcaaagaatatctaaaa
agacgatattatttcaaatatttgatgacacgatttcttttgatgaaatatcattgatag
cacttttcaaagaaagttcaagtgttgctccagtagttttgaaagattatttgaaagagc
gagttccagttaatgctaaatatatcgaattacatttaaattcactagagacttctgtac
ttccaaagttttttaggaagaagctcatggagctaatcaattttaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTTGAAACTATTGCACACGAAAT 570 651 200 Antisense
GGAAATTGAGGTGAACGGCGAGAAA 422 527 273 Antisense
GACAGTTTTCAACATTATATCGTTT 458 369 300 Antisense
GGAACATACAATATTTGCATCAACT 467 529 337 Antisense
TCCAACGGATGGAGTTCTTCGAAAA 23 587 381 Antisense
TTGATGACACGATTTCTTTTGATGA 462 705 461 Antisense
AAATATCATTGATAGCACTTTTCAA 41 117 485 Antisense
CAAGTGTTGCTCCAGTAGTTTTGAA 560 183 518 Antisense
GAAAGAGCGAGTTCCAGTTAATGCT 589 359 552 Antisense
TTCACTAGAGACTTCTGTACTTCCA 105 687 600 Antisense
GCTCATGGAGCTAATCAATTTTAAG 588 299 642 Antisense
Sequence Source Affymetrix Proprietary Database