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[177865_at]

Description F46B6.2 /REP_DB=WormBase Gene ID /WP=CE05868 /TR=Q20444 /GB=CAA94819.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 42      4grp_high_8_8 > 17      6grp_total > 30      4grp_total > 31      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 102.8
(3)
P 		52
(-2.3)
A 		45
(-3)
P 		66.8
(-0.7)
P 		58
B 102
(3)
P 		65.3
(-2.5)
P 		61.8
(-3)
A 		70
(-1.8)
P 		40
C 88
(3)
P 		55.4
(-3)
P 		56.9
(-2.7)
P 		86.1
(2.7)
P 		33
avr 97.6
(3) 		57.6
(-2.6) 		54.6
(-3) 		74.3
(-0.3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 59.2
(-0.1)
P 		82.2
(1.2)
P 		88
(1.5)
P 		113.4
(3)
P 		67.4
(0.3)
P 		9.3
(-3)
A 		104
B 91.8
(0.7)
P 		104.8
(1.8)
P 		119.2
(3)
P 		72.4
(-0.9)
P 		54.4
(-2.4)
P 		46.6
(-3)
P 		73
C 46.7
(-3)
P 		133.3
(3)
P 		91.3
(0.1)
P 		107.4
(1.2)
P 		76.8
(-0.9)
P 		46.4
(-3)
P 		87
avr 65.9
(-0.4) 		106.8
(3) 		99.5
(2.4) 		97.7
(2.2) 		66.2
(-0.4) 		34.1
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 37.4
(3)
P 		11.3
(-2.7)
A 		11.8
(-2.6)
P 		9.8
(-3)
P 		28
B 32.5
(3)
P 		16.1
(-2.4)
P 		14.3
(-3)
A 		14.9
(-2.8)
P 		18
C 29.1
(3)
P 		15.9
(-2.4)
P 		19.8
(-0.8)
P 		14.5
(-3)
P 		15
avr 33
(3) 		14.4
(-2.6) 		15.3
(-2.3) 		13.1
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 10.9
(-1.1)
P 		29.3
(3)
P 		19.2
(0.8)
P 		28.8
(2.9)
P 		20.3
(1)
P 		2.3
(-3)
A 		27
B 31.9
(2)
P 		34.9
(3)
P 		29
(1)
P 		19.2
(-2.4)
P 		22.1
(-1.4)
P 		17.4
(-3)
P 		18
C 17.3
(-2.6)
P 		40.7
(3)
P 		23.2
(-1.2)
P 		21.6
(-1.5)
P 		24.9
(-0.8)
P 		15.5
(-3)
P 		25
avr 20
(-0.9) 		35
(3) 		23.8
(0.1) 		23.2
(-0) 		22.4
(-0.2) 		11.7
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12412
Sequence Type Exemplar sequence
Representative Public ID F46B6.2 NCBI
Target Description F46B6.2 /REP_DB=WormBase Gene ID /WP=CE05868 /TR=Q20444 /GB=CAA94819.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073119(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073119 NCBI Caenorhabditis elegans F46B6.2 (F46B6.2) mRNA, complete cds. 11/11 None
SNAP00000041194 ENSEMBL cdna:SNAP chromosome:CEL140:V:9775012:9777013:1 11/11 None
GENEFINDER00000041208 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9775012:9777013:1 11/11 None
F46B6.2 ENSEMBL cdna:known chromosome:CEL140:V:9775012:9777013:1 gene:F46B6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9775011-9777013(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46B6.2
Entrez Gene 185839 Entrez gene
SwissProt Q20444 EMBL-EBI
WormBase CE05868 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94819 Hypothetical protein F46B6.2 [Caenorhabditis elegans] ref|NP_505520.1| F46B6.2 [Caenorhabditis elegans] 0.0
blast CAE72251 Hypothetical protein CBG19370 [Caenorhabditis briggsae] 1.0E-145
blast CAE72251 Hypothetical protein CBG19370 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505520.1 7 10-32,34-56,66-85,149-171,181-199,206-225,240-262
F46B6.2 7 10-32,34-56,66-85,149-171,181-199,206-225,240-262
SNAP00000041194 7 10-32,34-56,66-85,149-171,181-199,206-225,240-262
GENEFINDER00000041208 7 10-29,36-58,81-100,164-186,196-214,221-240,255-277
Sequence
Target Sequence 
>C. ELEGANS:177865_AT
ggattcggtttttcacatcaatttctttgactattttatctggtattcatctattaatat
gtactctactcacattctacagtgcaaccgaaaccaaaatccgtttatactcttatcact
atcaagtcgtcatatcaatatttatcattattgtttcattttttcatcttcgttactgtt
gcacattcttttttctatatcttccattggcaattggaatgttttcattacttcaaggaa
ttgtttcatggagaactaaatgtcatggttcaacaactagagctttaaacattattggag
cagcattcgcagttcttatgaatgctaccacaagttttggtatattctgctggtttaatc
gaaatactgttccgcatatgattacaaggcattgccattggttgtcacatcgagaagcat
attgtatgagagttgttcattttactcatccatata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCGGTTTTTCACATCAATTTC 473 507 440 Antisense
ACTCTACTCACATTCTACAGTGCAA 425 99 502 Antisense
ATCCGTTTATACTCTTATCACTATC 376 39 538 Antisense
ATCACTATCAAGTCGTCATATCAAT 22 29 554 Antisense
TTTTCATCTTCGTTACTGTTGCACA 280 677 600 Antisense
GCACATTCTTTTTTCTATATCTTCC 363 317 620 Antisense
TTGGAGCAGCATTCGCAGTTCTTAT 72 707 734 Antisense
GTTTTGGTATATTCTGCTGGTTTAA 625 447 773 Antisense
GAAATACTGTTCCGCATATGATTAC 199 363 800 Antisense
CATTGCCATTGGTTGTCACATCGAG 354 217 829 Antisense
GTTGTTCATTTTACTCATCCATATA 72 439 871 Antisense
Sequence Source Affymetrix Proprietary Database