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[177863_at]

Description T24D5.2 /REP_DB=WormBase Gene ID /WP=CE03722 /TR=Q22736 /GB=CAA92020.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 149.4
(3)
A 		108.8
(0.7)
A 		42.9
(-3)
A 		70
(-1.5)
A 		107
B 114.1
(3)
A 		48.9
(-3)
A 		80.8
(-0.1)
A 		96.1
(1.3)
A 		65
C 99.6
(3)
A 		61.1
(-2.9)
A 		61.1
(-2.9)
A 		60.7
(-3)
A 		39
avr 121
(3) 		72.9
(-1.9) 		61.6
(-3) 		75.6
(-1.6) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 51.3
(0.2)
A 		91.2
(3)
A 		17.8
(-2.2)
A 		26.5
(-1.6)
A 		8.9
(-2.8)
A 		6.1
(-3)
A 		85
B 56.7
(0.1)
A 		75.2
(1.9)
A 		86
(3)
A 		56.7
(0.1)
A 		43.2
(-1.2)
A 		24.7
(-3)
A 		61
C 118.3
(3)
A 		40.2
(-1.7)
A 		41.2
(-1.7)
A 		63.2
(-0.3)
A 		37.9
(-1.9)
A 		19.3
(-3)
A 		99
avr 75.4
(3) 		68.9
(2.3) 		48.3
(0.2) 		48.8
(0.3) 		30
(-1.6) 		16.7
(-3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 54.4
(3)
A 		23.6
(-1.2)
A 		11.2
(-2.9)
A 		10.3
(-3)
A 		44
B 36.4
(3)
A 		12.1
(-3)
A 		18.7
(-1.4)
A 		20.5
(-0.9)
A 		24
C 33
(3)
A 		17.6
(-1.1)
A 		21.3
(-0.1)
A 		10.2
(-3)
A 		23
avr 41.3
(3) 		17.8
(-2.1) 		17.1
(-2.3) 		13.7
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 9.5
(-1.5)
A 		32.5
(3)
A 		3.9
(-2.5)
A 		6.7
(-2)
A 		2.7
(-2.8)
A 		1.5
(-3)
A 		31
B 19.7
(1)
A 		25
(3)
A 		20.9
(1.4)
A 		15
(-0.8)
A 		17.5
(0.2)
A 		9.2
(-3)
A 		16
C 43.9
(3)
A 		12.3
(-2.1)
A 		10.5
(-2.3)
A 		12.7
(-2)
A 		12.3
(-2.1)
A 		6.4
(-3)
A 		38
avr 24.4
(3) 		23.3
(2.6) 		11.8
(-1) 		11.5
(-1.1) 		10.8
(-1.4) 		5.7
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17658
Sequence Type Exemplar sequence
Representative Public ID T24D5.2 NCBI
Target Description T24D5.2 /REP_DB=WormBase Gene ID /WP=CE03722 /TR=Q22736 /GB=CAA92020.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077703(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077703 NCBI Caenorhabditis elegans T24D5.2 (T24D5.2) mRNA, complete cds. 11/11 None
SNAP00000013139 ENSEMBL cdna:SNAP chromosome:CEL140:X:12584327:12586359:-1 11/11 None
GENEFINDER00000013147 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12584327:12586359:-1 11/11 None
T24D5.2 ENSEMBL cdna:known chromosome:CEL140:X:12583719:12586359:-1 gene:T24D5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12584326-12586359(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24D5.2
Entrez Gene 188850 Entrez gene
SwissProt Q22736 EMBL-EBI
WormBase CE03722 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92020 Hypothetical protein T24D5.2 [Caenorhabditis elegans] ref|NP_510104.1| T24D5.2 [Caenorhabditis elegans] 0.0
blast CAE57233 Hypothetical protein CBG00105 [Caenorhabditis briggsae] 2.0E-75
Sequence
Target Sequence 
>C. ELEGANS:177863_AT
gtaaccaatcgctcgcagcagatgggagagatggatctatcaaagtgtgtaagtacaatt
accgccgaaaaccttactgttgtcatggattctttcccgaacatcattgagattgtgaag
cttcatcgtccaatgctcaataagttcaccctaatgtgctccggcgagtacggaaatatc
atggaactagagcaagtgcgcaatgctgccaacctgaaactagacggactttcaaagatt
actgatgatcagctcaattccatcactgccacaaattttgagatcacttctaatataatc
actgatcaaggaatcaatagattcattaaggcgcgtcttgctgatgatattccggacaac
tacttcgcatcagtgggatgtcggcacggaaactggaagatgaaggaagtgctcagtggc
ttgaagtacaccgcatatgacgacgagatggcatatgtccgcaagaatggaatgattcca
atcaacgtctttgaagctgatttggtaagcttgccaaccactaaaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACCAATCGCTCGCAGCAGATGG 259 463 610 Antisense
CCGCCGAAAACCTTACTGTTGTCAT 263 263 671 Antisense
TCATGGATTCTTTCCCGAACATCAT 52 623 692 Antisense
TGTGAAGCTTCATCGTCCAATGCTC 240 557 723 Antisense
ATAAGTTCACCCTAATGTGCTCCGG 374 25 749 Antisense
AGCAAGTGCGCAATGCTGCCAACCT 624 75 800 Antisense
ATGATCAGCTCAATTCCATCACTGC 299 47 854 Antisense
AAGGCGCGTCTTGCTGATGATATTC 602 161 937 Antisense
ATATTCCGGACAACTACTTCGCATC 649 17 956 Antisense
GCTCAGTGGCTTGAAGTACACCGCA 691 299 1020 Antisense
GTAAGCTTGCCAACCACTAAACCAA 85 463 1114 Antisense
Sequence Source Affymetrix Proprietary Database