[Home] | [Total List]

[177861_at]

Description C30H6.2 /REP_DB=WormBase Gene ID /WP=CE15646 /TR=Q9XVR4 /GB=CAB02806.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 50      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 33.7
(-3)
A 		96.1
(3)
A 		82.2
(1.7)
A 		37.4
(-2.6)
A 		62
B 46.3
(-0.1)
A 		79.4
(3)
A 		40.1
(-0.7)
A 		16.2
(-3)
A 		63
C 34.7
(-1.3)
A 		91.4
(2.1)
A 		106.2
(3)
A 		5.9
(-3)
A 		100
avr 38.2
(-1.4) 		89
(3) 		76.2
(1.9) 		19.8
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 130.7
(1.4)
A 		70.3
(-1.9)
A 		49.3
(-3)
A 		135.7
(1.6)
A 		161.2
(3)
P 		94.4
(-0.6)
A 		112
B 75.6
(-2)
A 		56.5
(-3)
A 		78.3
(-1.8)
A 		130.8
(1)
M 		167.4
(3)
P 		140.9
(1.6)
P 		111
C 46.1
(-3)
A 		75.3
(-1.3)
A 		94
(-0.2)
A 		145.3
(2.9)
A 		141.1
(2.6)
P 		147.3
(3)
P 		101
avr 84.1
(-1.9) 		67.4
(-3) 		73.9
(-2.6) 		137.3
(1.7) 		156.6
(3) 		127.5
(1) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 12.3
(-0.5)
A 		20.9
(2.8)
A 		21.5
(3)
A 		5.5
(-3)
A 		16
B 14.8
(1.2)
A 		19.6
(3)
A 		9.3
(-0.8)
A 		3.5
(-3)
A 		16
C 11.5
(-1.3)
A 		26.3
(1.2)
A 		37
(3)
A 		1
(-3)
A 		36
avr 12.9
(-0) 		22.3
(2.9) 		22.6
(3) 		3.3
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 24.1
(-0.9)
A 		25
(-0.7)
A 		10.7
(-3)
A 		34.4
(0.8)
A 		48.6
(3)
P 		23
(-1.1)
A 		38
B 26.3
(-2.1)
A 		18.8
(-3)
A 		19
(-3)
A 		34.6
(-1.1)
M 		68
(3)
P 		52.5
(1.1)
P 		49
C 17.1
(-3)
A 		23
(-1.9)
A 		23.9
(-1.7)
A 		29.2
(-0.7)
A 		45.7
(2.3)
P 		49.3
(3)
P 		32
avr 22.5
(-2.2) 		22.3
(-2.3) 		17.9
(-3) 		32.7
(-0.5) 		54.1
(3) 		41.6
(0.9) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177861_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9456
Sequence Type Exemplar sequence
Representative Public ID C30H6.2 NCBI
Target Description C30H6.2 /REP_DB=WormBase Gene ID /WP=CE15646 /TR=Q9XVR4 /GB=CAB02806.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070695 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-141) (tag-141) mRNA, complete cds. 11/11 None
SNAP00000029649 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17364835:17366412:-1 11/11 None
GENEFINDER00000029664 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17364957:17368334:-1 11/11 None
C30H6.2 ENSEMBL cdna:known chromosome:CEL140:IV:17364957:17366412:-1 gene:C30H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17364962-17366418(-) 98.06 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-141
Ensembl C30H6.2
Entrez Gene 183065 Entrez gene
SwissProt Q9XVR4 EMBL-EBI
WormBase CE15646 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46873 metal ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02806 Hypothetical protein C30H6.2 [Caenorhabditis elegans] ref|NP_503096.1| Temporarily Assigned Gene name family member (tag-141) [Caenorhabditis elegans] 1.0E-169
blast CAB02806 Hypothetical protein C30H6.2 [Caenorhabditis elegans] ref|NP_503096.1| Temporarily Assigned Gene name family member (tag-141) [Caenorhabditis elegans] 1.0E-162
blast CAE57438 Hypothetical protein CBG00400 [Caenorhabditis briggsae] 1.0E-116
blast CAE57438 Hypothetical protein CBG00400 [Caenorhabditis briggsae] 1.0E-114
blast NP_001001591 solute carrier family 39 (zinc transporter), member 6 [Danio rerio] dbj|BAD18961.1| zinc transporter LIV1 [Danio rerio] 9.0E-30
blast XP_793407 PREDICTED: similar to solute carrier family 39 (zinc transporter), member 12 [Strongylocentrotus purpuratus] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 2.8E-94
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 2.4E-95
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 2.8E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503096.1 6 15-37,44-66,122-144,249-271,295-317,324-343
C30H6.2 6 15-37,44-66,122-144,249-271,295-317,324-343
SNAP00000029649 7 15-37,44-66,122-144,249-271,295-317,324-343,363-385
GENEFINDER00000029664 6 35-57,69-91,146-168,273-295,319-341,348-367
Sequence
Target Sequence 
>C. ELEGANS:177861_AT
agtcgccagttattacatcttcagtttccacacactctgacatcaaatcttcagcttcaa
atcatagtataactggtagcgaagaagataataataatgattcatcgaaaaaagaaagaa
gaaatagtgttgagttggagaagcgcagagagcaaggaggacacgagctgatcagtttaa
gagaggatggtgatgatgatggtacagagatttgcggactgaaaccccgagcattgataa
ttttattcggtgatggtgtacacaatttggtcgatggtcttgcaatgggagcttcattca
tgatttccgtgaaactcggattcataacaaccatcgcagtaatttgtcacgaacttcctc
atgaaattggagatctggcggtgctcatagattctgggctttcaatgtgtacagctctta
ttctaaatttattatctgccctgactgcatacgccggcttgttcattgcaatcgttctgg
gaagagatgaagaaattgagaccatccttctggcgatcacagctggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCGCCAGTTATTACATCTTCAGT 221 61 482 Antisense
TCTTCAGTTTCCACACACTCTGACA 537 615 499 Antisense
GACATCAAATCTTCAGCTTCAAATC 612 369 520 Antisense
GACTGAAACCCCGAGCATTGATAAT 539 375 698 Antisense
GGTCGATGGTCTTGCAATGGGAGCT 677 501 750 Antisense
GTAATTTGTCACGAACTTCCTCATG 242 463 820 Antisense
CTGGCGGTGCTCATAGATTCTGGGC 276 241 856 Antisense
TTATTATCTGCCCTGACTGCATACG 260 677 910 Antisense
TGCATACGCCGGCTTGTTCATTGCA 660 577 927 Antisense
GAAATTGAGACCATCCTTCTGGCGA 694 361 973 Antisense
TCCTTCTGGCGATCACAGCTGGAAT 74 593 986 Antisense
Sequence Source Affymetrix Proprietary Database