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[177860_at] 7TM chemoreceptor, sri family

Description T09E8.5 /REP_DB=WormBase Gene ID /WP=CE13495 /TR=Q22358 /GB=CAB01514.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 12      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 3.3
(-3)
A 		26.2
(2)
A 		10.2
(-1.5)
A 		30.8
(3)
A 		28
B 30.6
(3)
A 		6.6
(-2.1)
A 		2.4
(-3)
A 		6.5
(-2.1)
A 		28
C 3.7
(-2.6)
A 		2.2
(-3)
A 		12.4
(-0.4)
A 		25.6
(3)
A 		23
avr 12.5
(-1) 		11.7
(-1.4) 		8.3
(-3) 		21
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 8.8
(0.9)
A 		3.1
(-3)
A 		5.6
(-1.3)
A 		11.8
(3)
A 		6.4
(-0.7)
A 		4.4
(-2.1)
A 		9
B 28.9
(3)
A 		15.7
(0)
A 		5.7
(-2.3)
A 		3.5
(-2.8)
A 		2.5
(-3)
A 		10.2
(-1.3)
A 		26
C 7.6
(-2.1)
A 		39.7
(3)
A 		26.2
(0.9)
A 		11.1
(-1.6)
A 		3.9
(-2.7)
A 		2
(-3)
A 		38
avr 15.1
(1.3) 		19.5
(3) 		12.5
(0.2) 		8.8
(-1.2) 		4.3
(-3) 		5.5
(-2.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.2
(-3)
A 		5.7
(3)
A 		2.7
(-1)
A 		4.5
(1.4)
A 		5
B 9.8
(3)
A 		1.6
(-2.3)
A 		0.5
(-3)
A 		1.4
(-2.4)
A 		9
C 1.2
(-2)
A 		0.6
(-3)
A 		4.3
(3)
A 		4.3
(3)
A 		4
avr 4.1
(3) 		2.6
(-2.6) 		2.5
(-3) 		3.4
(0.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.6
(-1.4)
A 		1.1
(-3)
A 		1.2
(-2.7)
A 		3
(3)
A 		1.9
(-0.5)
A 		1.1
(-3)
A 		2
B 10.1
(3)
A 		5.2
(-0.2)
A 		1.4
(-2.7)
A 		0.9
(-3)
A 		1
(-2.9)
A 		3.8
(-1.1)
A 		9
C 2.8
(-1.9)
A 		12.1
(3)
A 		6.7
(0.2)
A 		2.2
(-2.2)
A 		1.3
(-2.7)
A 		0.7
(-3)
A 		11
avr 4.8
(1.3) 		6.1
(3) 		3.1
(-0.8) 		2
(-2.2) 		1.4
(-3) 		1.9
(-2.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13809
Sequence Type Exemplar sequence
Representative Public ID T09E8.5 NCBI
Target Description T09E8.5 /REP_DB=WormBase Gene ID /WP=CE13495 /TR=Q22358 /GB=CAB01514.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073879 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-6) (sri-6) mRNA, complete cds. 11/11 None
GENEFINDER00000032129 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13188275:13190019:1 11/11 None
T09E8.5 ENSEMBL cdna:known chromosome:CEL140:V:13188275:13190019:1 gene:T09E8.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032126 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13188274-13189767(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-6
Ensembl T09E8.5
Entrez Gene 188328 Entrez gene
SwissProt Q22358 EMBL-EBI
WormBase CE33692 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01514 Hypothetical protein T09E8.5 [Caenorhabditis elegans] ref|NP_506280.2| Serpentine Receptor, class I family member (sri-6) [Caenorhabditis elegans] 0.0
blast CAB03314 Hypothetical protein T06E6.4 [Caenorhabditis elegans] ref|NP_506828.2| Serpentine Receptor, class I family member (sri-7) [Caenorhabditis elegans] 1.0E-133
blast CAA20951 Hypothetical protein Y102A5C.29 [Caenorhabditis elegans] ref|NP_507301.1| Serpentine Receptor, class I family member (sri-9) [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.4E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506280.2 7 15-37,58-80,95-115,136-153,194-216,237-259,274-296
T09E8.5 7 15-37,58-80,95-115,136-153,194-216,237-259,274-296
GENEFINDER00000032129 7 15-37,58-80,95-115,136-153,194-216,237-259,274-296
Sequence
Target Sequence 
>C. ELEGANS:177860_AT
tcatacgggcgtcacaatctggatttttttgttttgttttctgcttcctgcaagcttatt
gtgtttattctataggcataatgcagcttcaaaaattaatcagagtggctcaaacaacct
ttatctcgagaagcttgtgatgattttaactcatattttcccatttctcaccgccttcgg
cacctggaactgtcaaatgaccttcgcgcagaaatatgagtacttgagtcaaaactaccc
agagtgcttattttggttagcatctgatagatttgaagcttatgactataagatgaatcc
ttggatcgtttcaacagcagctgcggcgattacgtttttggttattactgcaagctacgg
aggataccatggcatccatacgatgattatccttcaacgcctccgtgctcacatgtcagt
gcagacctaccagatgcacatcacagctctaatcagtttggcactgcaaatgctcactcc
gtcggtttttgctgttccggtgtatgtgtgggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATACGGGCGTCACAATCTGGATT 78 609 285 Antisense
TTTTCTGCTTCCTGCAAGCTTATTG 252 677 321 Antisense
GAGTGGCTCAAACAACCTTTATCTC 680 399 387 Antisense
TTTAACTCATATTTTCCCATTTCTC 494 673 429 Antisense
CTTCGGCACCTGGAACTGTCAAATG 218 221 459 Antisense
ACTGTCAAATGACCTTCGCGCAGAA 708 95 473 Antisense
ATCCTTGGATCGTTTCAACAGCAGC 614 39 581 Antisense
CAACAGCAGCTGCGGCGATTACGTT 512 189 596 Antisense
TACGATGATTATCCTTCAACGCCTC 151 649 663 Antisense
ATGCACATCACAGCTCTAATCAGTT 625 43 718 Antisense
TTGCTGTTCCGGTGTATGTGTGGGT 682 699 773 Antisense
Sequence Source Affymetrix Proprietary Database