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[177857_s_at]

Description T01B7.5 /REP_DB=WormBase Gene ID /WP=CE23934 /TR=Q22046 /GB=CAA91298.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 97      6grp_total > 97      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3513
1 2 3 4 range
A 929.9
(-2.6)
P 		715.6
(-3)
P 		859.8
(-2.8)
P 		4229
(3)
P 		3513
B 1012.9
(-2.6)
P 		836
(-2.9)
P 		800.9
(-3)
P 		4127.9
(3)
P 		3327
C 1112.6
(-2.1)
P 		720.5
(-3)
P 		883.6
(-2.6)
P 		3397.2
(3)
P 		2677
avr 1018.5
(-2.5) 		757.4
(-3) 		848.1
(-2.8) 		3918
(3) 		3161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 799
1 2 3 4 5 6 range
A 596
(-3)
P 		873.7
(-0.9)
P 		903.1
(-0.7)
P 		1049
(0.4)
P 		1138.6
(1.1)
P 		1395
(3)
P 		799
B 796.7
(-3)
P 		812.1
(-2.8)
P 		889.5
(-1.7)
P 		898.8
(-1.6)
P 		1165.7
(2.2)
P 		1221.4
(3)
P 		425
C 777.7
(-3)
P 		850.9
(-2.2)
P 		864.2
(-2.1)
P 		898.4
(-1.8)
P 		1082.2
(0.1)
P 		1358.5
(3)
P 		581
avr 723.5
(-3) 		845.6
(-1.8) 		885.6
(-1.4) 		948.7
(-0.8) 		1128.8
(1) 		1325
(3) 		602
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 724
1 2 3 4 range
A 338.6
(-0.6)
P 		155.3
(-3)
P 		224.8
(-2.1)
P 		619
(3)
P 		464
B 323
(-1.8)
P 		206.5
(-2.8)
P 		185.6
(-3)
P 		879.7
(3)
P 		694
C 368.3
(-0.4)
P 		207.1
(-3)
P 		308
(-1.3)
P 		572.8
(3)
P 		366
avr 343.3
(-1.2) 		189.6
(-3) 		239.5
(-2.4) 		690.5
(3) 		501

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 109.9
(-3)
P 		310.7
(2.2)
P 		196.7
(-0.8)
P 		266
(1)
P 		343.6
(3)
P 		339.6
(2.9)
P 		234
B 277.2
(-1.6)
P 		270.3
(-1.7)
P 		216
(-3)
P 		238.1
(-2.5)
P 		473.6
(3)
P 		455.4
(2.6)
P 		258
C 288.2
(-0.6)
P 		259.6
(-1.3)
P 		220
(-2.1)
P 		180.7
(-3)
P 		350.2
(0.7)
P 		454.8
(3)
P 		274
avr 225.1
(-2.6) 		280.2
(-1) 		210.9
(-3) 		228.3
(-2.5) 		389.1
(2.2) 		416.6
(3) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177857_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3627
Sequence Type Exemplar sequence
Representative Public ID T01B7.5 NCBI
Target Description T01B7.5 /REP_DB=WormBase Gene ID /WP=CE23934 /TR=Q22046 /GB=CAA91298.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027120 NCBI Caenorhabditis elegans T01B7.5a (T01B7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000025630 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8716768:8719999:1 11/11 None
T01B7.5 ENSEMBL cdna:known chromosome:CEL140:II:8716768:8721614:1 gene:T01B7.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027121 7/11 Cross Hyb Matching Probes None
SNAP00000025606 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174395 2 1 NM_001027120 177857_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8716764-8719996(+) 100.0 100.0
Public Domain and Genome References
Ensembl T01B7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91298 Hypothetical protein T01B7.5a [Caenorhabditis elegans] ref|NP_001022291.1| T01B7.5a [Caenorhabditis elegans] 1.0E-167
blast CAA91298 Hypothetical protein T01B7.5a [Caenorhabditis elegans] ref|NP_001022291.1| T01B7.5a [Caenorhabditis elegans] 1.0E-161
blast CAE59724 Hypothetical protein CBG03160 [Caenorhabditis briggsae] 1.0E-142
blast CAE59724 Hypothetical protein CBG03160 [Caenorhabditis briggsae] 1.0E-136
blast CAI70408 Hypothetical protein T01B7.5b [Caenorhabditis elegans] ref|NP_001022292.1| T01B7.5b [Caenorhabditis elegans] 1.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR007146 EMBL-EBI Sas10/Utp3 9.6E-79
Pfam IPR007146 EMBL-EBI Sas10/Utp3 2.9E-59
Pfam IPR007146 EMBL-EBI Sas10/Utp3 1.0E-40
Pfam IPR007146 EMBL-EBI Sas10/Utp3 1.5E-23
Pfam IPR007146 EMBL-EBI Sas10/Utp3 2.9E-59
Sequence
Target Sequence 
>C. ELEGANS:177857_S_AT
caaaatgcgcattgcgatcgcagttagtctacgttgcccagacatatgcatcatacctca
tgaacacagcattcctgttgaatctcagagccaaacagttttccaatgaaaaactcgacg
atccacttgttgacatccatcctgtagtggagtcgctgaaacgacttgaaaagaaaatca
ccgagtgtgaagattttttgcattcgaattcggatcatctggatgagctcaagaaatggg
cggagtcggagccagaaaatatggaagaattgatttcgaaggttggagatgttcaactta
caaagaagaattttggagcaattatgaacaataatctttcaacaatcacatcttctgata
acacatcaattcatccacacttcacaccaatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATGCGCATTGCGATCGCAGTT 277 189 608 Antisense
GATCGCAGTTAGTCTACGTTGCCCA 38 415 623 Antisense
TCTACGTTGCCCAGACATATGCATC 138 615 635 Antisense
TACCTCATGAACACAGCATTCCTGT 244 649 661 Antisense
GCATTCCTGTTGAATCTCAGAGCCA 293 307 676 Antisense
AATCTCAGAGCCAAACAGTTTTCCA 94 171 688 Antisense
AAAACTCGACGATCCACTTGTTGAC 388 129 717 Antisense
CACTTGTTGACATCCATCCTGTAGT 666 195 731 Antisense
GCATTCGAATTCGGATCATCTGGAT 550 307 807 Antisense
ATAACACATCAATTCATCCACACTT 453 25 965 Antisense
TTCATCCACACTTCACACCAATGGA 346 687 977 Antisense
Sequence Source Affymetrix Proprietary Database