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[177856_at]

Description R13H4.7 /REP_DB=WormBase Gene ID /WP=CE12812 /TR=P90946 /GB=CAB04652.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 25      6grp_total > 13      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 436
(3)
P 		147.9
(-2.5)
A 		120.6
(-3)
A 		190
(-1.7)
M 		315
B 393.2
(3)
P 		153.3
(-2.6)
P 		134.8
(-3)
P 		175.8
(-2)
P 		258
C 500.6
(3)
P 		192.4
(-1.8)
P 		119.2
(-3)
P 		246.4
(-1)
P 		381
avr 443.3
(3) 		164.5
(-2.3) 		124.9
(-3) 		204.1
(-1.5) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 348.9
(3)
P 		296.6
(1.9)
P 		288.5
(1.7)
P 		253
(1)
P 		236.2
(0.6)
P 		62.1
(-3)
A 		287
B 404
(3)
P 		400
(2.9)
P 		241.5
(0.1)
P 		272.7
(0.7)
P 		230.9
(-0.1)
P 		67.5
(-3)
A 		337
C 292.1
(1.3)
P 		357.8
(3)
P 		238.7
(-0)
P 		336.3
(2.5)
P 		151.4
(-2.2)
P 		120
(-3)
A 		238
avr 348.3
(2.9) 		351.5
(3) 		256.2
(0.9) 		287.3
(1.6) 		206.2
(-0.2) 		83.2
(-3) 		268
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 158.8
(3)
P 		32.1
(-2.8)
A 		31.5
(-2.8)
A 		27.8
(-3)
M 		131
B 125.4
(3)
P 		37.9
(-2.6)
P 		31.2
(-3)
P 		37.5
(-2.6)
P 		94
C 165.7
(3)
P 		55.3
(-2.3)
P 		41.5
(-3)
P 		41.5
(-3)
P 		124
avr 150
(3) 		41.8
(-2.6) 		34.7
(-3) 		35.6
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 64.3
(0.3)
P 		105.5
(3)
P 		62.8
(0.2)
P 		64.2
(0.3)
P 		71.3
(0.7)
P 		15.1
(-3)
A 		90
B 140.6
(3)
P 		133.1
(2.6)
P 		58.6
(-1.3)
P 		72.2
(-0.6)
P 		93.8
(0.6)
P 		25.2
(-3)
A 		115
C 108.3
(2.9)
P 		109.2
(3)
P 		60.7
(-1.2)
P 		67.6
(-0.6)
P 		49
(-2.2)
P 		40.2
(-3)
A 		69
avr 104.4
(2.2) 		115.9
(3) 		60.7
(-0.7) 		68
(-0.2) 		71.4
(0) 		26.8
(-3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12929
Sequence Type Exemplar sequence
Representative Public ID R13H4.7 NCBI
Target Description R13H4.7 /REP_DB=WormBase Gene ID /WP=CE12812 /TR=P90946 /GB=CAB04652.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073587 NCBI Caenorhabditis elegans R13H4.7 (R13H4.7) mRNA, complete cds. 11/11 None
SNAP00000036686 ENSEMBL cdna:SNAP chromosome:CEL140:V:11869262:11870822:-1 11/11 None
GENEFINDER00000036692 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11869199:11870822:-1 11/11 None
R13H4.7 ENSEMBL cdna:known chromosome:CEL140:V:11869686:11870822:-1 gene:R13H4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11869770-11870822(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13H4.7
Entrez Gene 187874 Entrez gene
SwissProt P90946 EMBL-EBI
WormBase CE35606 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE75278 Hypothetical protein CBG23244 [Caenorhabditis briggsae] 1.0E-179
blast CAE75278 Hypothetical protein CBG23244 [Caenorhabditis briggsae] 1.0E-178
blast CAB04652 Hypothetical protein R13H4.7 [Caenorhabditis elegans] ref|NP_505988.2| R13H4.7 [Caenorhabditis elegans] 1.0E-169
blast CAB04652 Hypothetical protein R13H4.7 [Caenorhabditis elegans] ref|NP_505988.2| R13H4.7 [Caenorhabditis elegans] 1.0E-167
blast CAE75278 Hypothetical protein CBG23244 [Caenorhabditis briggsae] 1.0E-147
blast CAH04727 Hypothetical protein C34B4.3 [Caenorhabditis elegans] emb|CAH04707.1| Hypothetical protein C34B4.3 [Caenorhabditis elegans] ref|NP_001023696.1| C34B4.3 [Caenorhabditis elegans] 9.0E-52
blast CAH04727 Hypothetical protein C34B4.3 [Caenorhabditis elegans] emb|CAH04707.1| Hypothetical protein C34B4.3 [Caenorhabditis elegans] ref|NP_001023696.1| C34B4.3 [Caenorhabditis elegans] 1.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505988.2 7 10-29,42-64,79-101,114-136,173-195,232-250,260-282
R13H4.7 7 10-29,42-64,79-101,114-136,173-195,232-250,260-282
SNAP00000036686 7 10-29,42-64,79-101,114-136,173-195,232-249,264-286
GENEFINDER00000036692 7 10-29,42-64,79-101,114-136,173-195,232-249,264-286
Sequence
Target Sequence 
>C. ELEGANS:177856_AT
agtcattgcatggtcacgtcttgccgcagttcaatggccgaattggtttcgtacacttcc
acatggcacgagtattatgatctgtgcaattccatggttcactggattattgcagagtct
agttgagcatcagttcgactggttcacaccattattctactcaccaactcgttatggaat
gcattctgattgggaaaaatatgaactttctggaactaatacatattacatggtgtgtaa
tgtaattctgatggtggtgccttttccgttgtacgttctggctctcgcagttttatttca
aagacaaacttcgaggaatatgcgtataacttcgttcaaaatactcgcacgcaccaatat
ctacatcatcatatgcggcacaacaacgccaattgagtatagaaactcgtcttctggttc
cttgtataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCATTGCATGGTCACGTCTTGCC 384 61 300 Antisense
GTCTTGCCGCAGTTCAATGGCCGAA 490 467 317 Antisense
GAATTGGTTTCGTACACTTCCACAT 470 323 339 Antisense
GATCTGTGCAATTCCATGGTTCACT 490 417 378 Antisense
TGGTTCACACCATTATTCTACTCAC 474 551 439 Antisense
TTATTCTACTCACCAACTCGTTATG 521 677 451 Antisense
AATTCTGATGGTGGTGCCTTTTCCG 272 175 543 Antisense
TGCCTTTTCCGTTGTACGTTCTGGC 296 585 557 Antisense
GTTCTGGCTCTCGCAGTTTTATTTC 452 443 574 Antisense
CACGCACCAATATCTACATCATCAT 495 199 647 Antisense
CTCGTCTTCTGGTTCCTTGTATAAT 633 231 705 Antisense
Sequence Source Affymetrix Proprietary Database