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[177855_at] 7TM chemoreceptor, srw family

Description F57G8.4 /REP_DB=WormBase Gene ID /WP=CE20888 /TR=Q9XU87 /GB=CAB05536.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 05      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 28.8
(-0.8)
A 		8.5
(-3)
A 		21.7
(-1.5)
A 		63.1
(3)
A 		55
B 28.2
(1.8)
P 		27.9
(1.8)
A 		7.2
(-3)
A 		33.3
(3)
A 		26
C 28.6
(-0.5)
P 		5
(-3)
A 		31.8
(-0.2)
A 		62.5
(3)
A 		58
avr 28.5
(-0.8) 		13.8
(-3) 		20.2
(-2) 		53
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 25
(3)
A 		7
(-1.5)
A 		8.5
(-1.1)
A 		1
(-3)
A 		13.9
(0.2)
A 		4.9
(-2)
A 		24
B 4.7
(-2.6)
A 		26.8
(3)
A 		25.1
(2.6)
A 		17.6
(0.7)
A 		15.1
(0)
A 		3.1
(-3)
A 		24
C 15.2
(-1.6)
A 		44.5
(3)
A 		27.3
(0.3)
A 		6
(-3)
A 		17.7
(-1.2)
A 		15
(-1.6)
A 		39
avr 15
(-0.6) 		26.1
(3) 		20.3
(1.1) 		8.2
(-2.8) 		15.6
(-0.4) 		7.7
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.5
(3)
A 		1.9
(-3)
A 		5.7
(-0.3)
A 		9.2
(2.1)
A 		9
B 9
(3)
P 		6.9
(1.3)
A 		1.7
(-3)
A 		7.1
(1.4)
A 		7
C 9.5
(2)
P 		1.5
(-3)
A 		11.1
(3)
A 		10.5
(2.6)
A 		10
avr 9.7
(3) 		3.4
(-3) 		6.2
(-0.3) 		8.9
(2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.6
(3)
A 		2.5
(0.1)
A 		1.9
(-0.8)
A 		0.3
(-3)
A 		4.2
(2.4)
A 		1.2
(-1.7)
A 		4
B 1.6
(-2.7)
A 		8.9
(3)
A 		6.1
(0.8)
A 		4.7
(-0.3)
A 		6.1
(0.8)
A 		1.2
(-3)
A 		8
C 5.6
(-0.9)
A 		13.6
(3)
A 		6.9
(-0.2)
A 		1.2
(-3)
A 		5.7
(-0.8)
A 		5
(-1.2)
A 		12
avr 3.9
(-1.3) 		8.3
(3) 		5
(-0.2) 		2.1
(-3) 		5.3
(0.1) 		2.5
(-2.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12821
Sequence Type Exemplar sequence
Representative Public ID F57G8.4 NCBI
Target Description F57G8.4 /REP_DB=WormBase Gene ID /WP=CE20888 /TR=Q9XU87 /GB=CAB05536.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074728(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074728 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-87) (srw-87) mRNA, complete cds. 11/11 None
SNAP00000042079 ENSEMBL cdna:SNAP chromosome:CEL140:V:16339391:16340829:1 10/11 None
GENEFINDER00000042082 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16339209:16341443:1 10/11 None
F57G8.4 ENSEMBL cdna:known chromosome:CEL140:V:16339209:16340860:1 gene:F57G8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16339208-16340860(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-87
Ensembl F57G8.4
Entrez Gene 186467 Entrez gene
SwissProt Q9XU87 EMBL-EBI
WormBase CE20888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05536 Hypothetical protein F57G8.4 [Caenorhabditis elegans] ref|NP_507129.1| Serpentine Receptor, class W family member (srw-87) [Caenorhabditis elegans] 0.0
blast CAE74939 Hypothetical protein CBG22827 [Caenorhabditis briggsae] 1.0E-127
blast CAE74939 Hypothetical protein CBG22827 [Caenorhabditis briggsae] 1.0E-123
blast CAB05536 Hypothetical protein F57G8.4 [Caenorhabditis elegans] ref|NP_507129.1| Serpentine Receptor, class W family member (srw-87) [Caenorhabditis elegans] 1.0E-116
blast CAE74939 Hypothetical protein CBG22827 [Caenorhabditis briggsae] 4.0E-74
blast AAB37921 Serpentine receptor, class w protein 97 [Caenorhabditis elegans] ref|NP_494034.1| Serpentine Receptor, class W family member (srw-97) [Caenorhabditis elegans] 2.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507129.1 7 18-40,47-69,110-127,139-161,210-232,261-283,298-320
F57G8.4 7 18-40,47-69,110-127,139-161,210-232,261-283,298-320
SNAP00000042079 3 7-25,95-117,164-186
GENEFINDER00000042082 7 18-40,47-69,110-127,139-161,210-232,261-283,298-320
Sequence
Target Sequence 
>C. ELEGANS:177855_AT
ttttctcaatattctactacttccgatatgaagttgttaataatggaactttctggacac
ctccggcaacctgcgctcagtaccctgcaggatttagggttccgaattttgtccttcaag
aacgagaattttacaaagctgccaatggacttttccgtactattaacttgttggttgtag
gagttttggcgaagttcttaccgtgcatattgtttccgacgctaaccattattttgacta
aagagctgaaaaaggcagtaagagcaagagaagaagcaagaaaggatggggctgtgggga
aaaaaaaagaagtcgcaacacgctttgtgatttacatgactgtttcttttgttattatag
aattccctattggaatttgtttttgtattgaagcggcttcaggaatttatagtcaaggaa
gcgctgcttcaagtatcatccaactactcaacatggtctatgttgtactgacgctttccc
attttttgatctgcttttcaatgtcttcgcaatacagaaaaactgtgaaacagatattct
ctcgtggtccttctctacaaaacaaggcaaagtcagtcatcagcgtggttcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTCAATATTCTACTACTTCCG 399 675 473 Antisense
CGCTCAGTACCCTGCAGGATTTAGG 498 255 546 Antisense
TGGACTTTTCCGTACTATTAACTTG 342 543 618 Antisense
GTTTTGGCGAAGTTCTTACCGTGCA 393 447 655 Antisense
TACCGTGCATATTGTTTCCGACGCT 604 647 671 Antisense
TTCCGACGCTAACCATTATTTTGAC 440 695 686 Antisense
GAAGTCGCAACACGCTTTGTGATTT 56 337 781 Antisense
AAGCGCTGCTTCAAGTATCATCCAA 540 147 891 Antisense
GTCTATGTTGTACTGACGCTTTCCC 565 469 928 Antisense
GATCTGCTTTTCAATGTCTTCGCAA 380 419 960 Antisense
AAGTCAGTCATCAGCGTGGTTCATA 34 159 1042 Antisense
Sequence Source Affymetrix Proprietary Database