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[177854_at]

Description T26H2.8 /REP_DB=WormBase Gene ID /WP=CE16493 /TR=O18140 /GB=CAB04849.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 04      6grp_cgc > 28      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 111.2
(-0.8)
A 		23.6
(-3)
A 		39.6
(-2.6)
A 		266.8
(3)
A 		243
B 142.9
(-2)
A 		101.5
(-3)
A 		120
(-2.6)
A 		353
(3)
P 		252
C 146.7
(-1.1)
A 		100.8
(-1.9)
A 		39.4
(-3)
A 		378.8
(3)
M 		339
avr 133.6
(-1.5) 		75.3
(-2.8) 		66.3
(-3) 		332.9
(3) 		267

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 162
(-0.4)
A 		113.1
(-1.3)
A 		82.9
(-1.9)
A 		24.6
(-3)
A 		67.7
(-2.2)
A 		346.1
(3)
P 		322
B 165.9
(0.5)
A 		115.3
(-0.7)
A 		44.9
(-2.4)
A 		17.6
(-3)
A 		82.2
(-1.5)
A 		271.2
(3)
P 		254
C 155.7
(-0.1)
A 		75.8
(-1.8)
A 		90.5
(-1.5)
A 		21.7
(-3)
A 		44.7
(-2.5)
A 		302.9
(3)
P 		281
avr 161.2
(-0.1) 		101.4
(-1.3) 		72.8
(-1.9) 		21.3
(-3) 		64.9
(-2.1) 		306.7
(3) 		285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 40.5
(3)
A 		5.1
(-3)
A 		10.4
(-2.1)
A 		39.1
(2.8)
A 		35
B 45.6
(-0.5)
A 		25.1
(-3)
A 		27.8
(-2.7)
A 		75.2
(3)
P 		50
C 48.6
(1.2)
A 		29
(-1.2)
A 		13.7
(-3)
A 		63.9
(3)
M 		50
avr 44.9
(0.9) 		19.7
(-2.7) 		17.3
(-3) 		59.4
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 29.9
(-1.2)
A 		40.2
(-0.4)
A 		18.1
(-2.1)
A 		6.3
(-3)
A 		20.4
(-1.9)
A 		84.3
(3)
P 		78
B 57.7
(0.3)
A 		38.4
(-0.9)
A 		10.9
(-2.6)
A 		4.7
(-3)
A 		33.4
(-1.2)
A 		101.1
(3)
P 		96
C 57.7
(0.3)
A 		23.1
(-1.8)
A 		23
(-1.8)
A 		4.4
(-3)
A 		14.4
(-2.4)
A 		101.4
(3)
P 		97
avr 48.4
(-0.1) 		33.9
(-1.1) 		17.3
(-2.2) 		5.1
(-3) 		22.7
(-1.8) 		95.6
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177854_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12773
Sequence Type Exemplar sequence
Representative Public ID T26H2.8 NCBI
Target Description T26H2.8 /REP_DB=WormBase Gene ID /WP=CE16493 /TR=O18140 /GB=CAB04849.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075334(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075334 NCBI Caenorhabditis elegans Serpentine Receptor, class R family member (srr-2) (srr-2) mRNA, complete cds. 11/11 None
SNAP00000014885 ENSEMBL cdna:SNAP chromosome:CEL140:V:19216258:19221911:-1 11/11 None
GENEFINDER00000014906 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19210323:19219623:-1 11/11 None
T26H2.8 ENSEMBL cdna:known chromosome:CEL140:V:19216258:19219623:-1 gene:T26H2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19216257-19219623(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srr-2
Ensembl T26H2.8
Entrez Gene 188953 Entrez gene
SwissProt O18140 EMBL-EBI
WormBase CE16493 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04849 Hypothetical protein T26H2.8 [Caenorhabditis elegans] ref|NP_507735.1| Serpentine Receptor, class R family member (srr-2) [Caenorhabditis elegans] 0.0
blast CAB04850 Hypothetical protein T26H2.9 [Caenorhabditis elegans] ref|NP_507734.4| Nuclear Hormone Receptor family member (nhr-79) [Caenorhabditis elegans] 0.0
blast AAK17979 nuclear receptor NHR-79 [Caenorhabditis elegans] 0.0
blast CAE73151 Hypothetical protein CBG20542 [Caenorhabditis briggsae] 0.0
blast CAB04849 Hypothetical protein T26H2.8 [Caenorhabditis elegans] ref|NP_507735.1| Serpentine Receptor, class R family member (srr-2) [Caenorhabditis elegans] 1.0E-168
blast CAE56200 Hypothetical protein CBG23824 [Caenorhabditis briggsae] 1.0E-124
blast CAB04315 Hypothetical protein F36D3.3 [Caenorhabditis elegans] ref|NP_507180.1| Serpentine Receptor, class R family member (srr-3) [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 1.0E-126
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 1.0E-126
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.7E-17
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.9E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507735.1 7 40-62,77-94,134-153,168-190,244-266,276-298,362-380
T26H2.8 7 40-62,77-94,134-153,168-190,244-266,276-298,362-380
SNAP00000014885 5 83-102,117-139,193-215,225-247,311-329
GENEFINDER00000014906 7 40-62,77-94,134-153,168-190,244-266,276-298,363-385
Sequence
Target Sequence 
>C. ELEGANS:177854_AT
gcatacgtgaactttcttttcctgccaattcatgcattaatacaaaatgcaattgctaga
gaattccatgttttcaatgaggaattggaaggtgcatcgaagaataaggaattgttgaac
cctgcaattttccaaacatttgccgaccgtcagatcaaaatgttcgaatacacaaatgca
ctaaccacccggcttatgcctttcatgagttctgctccgtttttaatattgactgctctg
gctaatgtaacttttattttcacaaatttgggctccttaatagacacatactactacatt
tgtatgattggattaatgatttgttgcattataatttcttctaatttgatgtatccacca
gctttggttcaagaagcgatgctccacacctccacagtccttatggacgaccagtatgtc
catcattccaaagatccacaaatctacactacctaccgcagtatggtggatcgatcaatc
aataatcgcacagtcaacctagttgtccaaattttcagtgtgaatcggaaaaatattgag
agagcttattttgttataactaatattgtgttgcttatgaccgtgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATACGTGAACTTTCTTTTCCTGC 48 309 553 Antisense
AAACATTTGCCGACCGTCAGATCAA 156 127 686 Antisense
GGCTTATGCCTTTCATGAGTTCTGC 642 537 743 Antisense
TGAGTTCTGCTCCGTTTTTAATATT 47 569 758 Antisense
GATGTATCCACCAGCTTTGGTTCAA 601 409 900 Antisense
GTTCAAGAAGCGATGCTCCACACCT 674 443 919 Antisense
ACACCTCCACAGTCCTTATGGACGA 32 111 938 Antisense
GACGACCAGTATGTCCATCATTCCA 691 377 958 Antisense
TCTACACTACCTACCGCAGTATGGT 526 611 995 Antisense
TAATCGCACAGTCAACCTAGTTGTC 491 633 1035 Antisense
ATTGTGTTGCTTATGACCGTGTTTT 683 3 1117 Antisense
Sequence Source Affymetrix Proprietary Database