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[177852_at]

Description ZC376.6 /REP_DB=WormBase Gene ID /WP=CE15203 /TR=Q23271 /GB=CAB00882.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_high_8_8 > 33      6grp_highest_nonorm > 71      6grp_total > 0      4grp_total > 39      6grp_total_sub > Hat      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 299.4
(3)
P 		160.2
(-2.4)
A 		145
(-3)
A 		190.7
(-1.2)
P 		154
B 313.1
(3)
P 		84.9
(-3)
A 		101.8
(-2.6)
A 		165.1
(-0.9)
P 		228
C 300.4
(3)
P 		201.2
(-1.1)
P 		160.3
(-2.8)
P 		155.3
(-3)
P 		145
avr 304.3
(3) 		148.8
(-2.5) 		135.7
(-3) 		170.4
(-1.8) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 243.4
(-3)
P 		328.5
(2.3)
P 		243.2
(-3)
P 		340.3
(3)
P 		272.1
(-1.2)
P 		305.3
(0.8)
P 		97
B 334.4
(0.4)
P 		400.1
(3)
P 		248.4
(-3)
P 		288.1
(-1.4)
P 		256
(-2.7)
P 		365.6
(1.6)
P 		152
C 259.7
(-2.3)
P 		404.7
(3)
P 		313.2
(-0.4)
P 		358.1
(1.3)
P 		241.2
(-3)
P 		344.6
(0.8)
P 		164
avr 279.2
(-1.9) 		377.8
(3) 		268.3
(-2.4) 		328.8
(0.6) 		256.4
(-3) 		338.5
(1.1) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 109
(3)
P 		34.8
(-2.5)
A 		37.9
(-2.3)
A 		27.9
(-3)
P 		81
B 99.8
(3)
P 		21
(-3)
A 		23.6
(-2.8)
A 		35.2
(-1.9)
P 		79
C 99.5
(3)
P 		57.9
(-0.4)
P 		55.9
(-0.6)
P 		26.2
(-3)
P 		73
avr 102.8
(3) 		37.9
(-2.3) 		39.1
(-2.2) 		29.8
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 44.9
(-3)
P 		116.8
(3)
P 		53
(-2.3)
P 		86.3
(0.5)
P 		82.1
(0.1)
P 		74.3
(-0.5)
P 		72
B 116.4
(1.4)
P 		133.2
(2.8)
P 		60.3
(-3)
P 		76.3
(-1.7)
P 		104
(0.4)
P 		136.3
(3)
P 		76
C 96.2
(-0.2)
P 		123.5
(3)
P 		79.7
(-2.1)
P 		72
(-3)
P 		78
(-2.3)
P 		115.3
(2)
P 		52
avr 85.8
(-0.9) 		124.5
(3) 		64.3
(-3) 		78.2
(-1.6) 		88
(-0.6) 		108.6
(1.4) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177852_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14751
Sequence Type Exemplar sequence
Representative Public ID ZC376.6 NCBI
Target Description ZC376.6 /REP_DB=WormBase Gene ID /WP=CE15203 /TR=Q23271 /GB=CAB00882.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074113(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074113 NCBI Caenorhabditis elegans ZC376.6 (ZC376.6) mRNA, complete cds. 11/11 None
SNAP00000015359 ENSEMBL cdna:SNAP chromosome:CEL140:V:14188373:14194527:1 11/11 None
GENEFINDER00000015367 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14188373:14194527:1 11/11 None
ZC376.6 ENSEMBL cdna:known chromosome:CEL140:V:14188373:14194716:1 gene:ZC376.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14188372-14194527(+) 98.76 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC376.6
Entrez Gene 179921 Entrez gene
SwissProt Q23271 EMBL-EBI
WormBase CE15203 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00882 Hypothetical protein ZC376.6 [Caenorhabditis elegans] ref|NP_506514.1| ZC376.6 [Caenorhabditis elegans] 0.0
blast CAE61003 Hypothetical protein CBG04741 [Caenorhabditis briggsae] 0.0
blast XP_623755 PREDICTED: similar to ENSANGP00000028514 [Apis mellifera] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:177852_AT
aaagatgatccatctgacttctccctcctcgaaaaacgtcgacaaatccgtcgtattgcc
tgtgaatatattcatcgaacatttttggattatgaaggtctcattcgagtcgttcttcat
caacgctttccacttcgtcaagttcgtgatctagtcgaagggattccagctctattcgct
ggaaatggtctgatccttgaaatgctcacacttcctgaacagcaacgaagatttttcgca
gtggtatttgctgcggagatatgtagaaagtaccgagttcgtgagtcgctggagacagct
cgtgttgtatgtgacattgttcattcacttcataagcatggtgaacttccttcttcatac
aaattatggaaacatgtggcgccggctctcatgcttctagctgtcgagtttccatcactt
gctgatagtatcaatcgtcttctgactcgtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGATGATCCATCTGACTTCTCCC 231 123 2887 Antisense
TCTCCCTCCTCGAAAAACGTCGACA 104 611 2906 Antisense
GACAAATCCGTCGTATTGCCTGTGA 651 365 2927 Antisense
AAGGTCTCATTCGAGTCGTTCTTCA 116 161 2981 Antisense
GAAGGGATTCCAGCTCTATTCGCTG 406 335 3043 Antisense
TGAAATGCTCACACTTCCTGAACAG 222 573 3084 Antisense
GTACCGAGTTCGTGAGTCGCTGGAG 329 457 3156 Antisense
GACATTGTTCATTCACTTCATAAGC 335 371 3199 Antisense
GCATGGTGAACTTCCTTCTTCATAC 315 311 3222 Antisense
ATGCTTCTAGCTGTCGAGTTTCCAT 43 43 3277 Antisense
TATCAATCGTCTTCTGACTCGTGTC 118 659 3315 Antisense
Sequence Source Affymetrix Proprietary Database