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[177851_at]

Description W01C9.2 /REP_DB=WormBase Gene ID /WP=CE02368 /TR=Q23118 /GB=CAA90270.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      6grp_total > 83      4grp_total > 25      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 12.9
(-3)
A 		62.1
(1.6)
P 		52.8
(0.7)
A 		77.6
(3)
P 		65
B 53.1
(-3)
A 		86.3
(3)
P 		69.6
(-0)
P 		61.5
(-1.5)
P 		33
C 17
(-3)
A 		52.8
(-1.7)
P 		46.6
(-1.9)
P 		178.3
(3)
P 		161
avr 27.7
(-3) 		67.1
(0) 		56.3
(-0.8) 		105.8
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1500
1 2 3 4 5 6 range
A 98
(-2.8)
P 		43.5
(-3)
A 		83.9
(-2.8)
P 		1399.1
(2.6)
P 		1486.7
(3)
P 		332
(-1.8)
P 		1443
B 39.7
(-3)
P 		40.1
(-3)
M 		78.7
(-2.8)
P 		1374.5
(2.4)
P 		1535
(3)
P 		346.7
(-1.8)
P 		1495
C 35
(-3)
A 		48.8
(-2.9)
P 		85.9
(-2.8)
P 		1513.7
(3)
P 		1287
(2.1)
P 		444.7
(-1.3)
P 		1479
avr 57.6
(-2.9) 		44.1
(-3) 		82.8
(-2.8) 		1429.1
(3) 		1436.2
(3) 		374.5
(-1.6) 		1392
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 4.7
(-3)
A 		13.5
(2.8)
P 		13.8
(3)
A 		11.4
(1.4)
P 		9
B 16.9
(-0.2)
A 		21.3
(3)
P 		16.1
(-0.8)
P 		13.1
(-3)
P 		8
C 5.6
(-3)
A 		15.2
(-0.6)
P 		16.3
(-0.4)
P 		30.1
(3)
P 		25
avr 9.1
(-3) 		16.7
(2) 		15.4
(1.2) 		18.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 611
1 2 3 4 5 6 range
A 18.1
(-3)
P 		15.5
(-3)
A 		18.3
(-3)
P 		354.8
(1.7)
P 		448.6
(3)
P 		80.8
(-2.1)
P 		433
B 13.8
(-3)
P 		13.3
(-3)
M 		19.1
(-2.9)
P 		364
(0.4)
P 		623.7
(3)
P 		129.3
(-1.9)
P 		610
C 13
(-3)
A 		14.9
(-3)
P 		21.9
(-2.9)
P 		304.4
(1.3)
P 		416.5
(3)
P 		148.9
(-1)
P 		404
avr 15
(-3) 		14.6
(-3) 		19.8
(-2.9) 		341.1
(1.1) 		496.3
(3) 		119.7
(-1.7) 		482
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177851_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3648
Sequence Type Exemplar sequence
Representative Public ID W01C9.2 NCBI
Target Description W01C9.2 /REP_DB=WormBase Gene ID /WP=CE02368 /TR=Q23118 /GB=CAA90270.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063402 NCBI Caenorhabditis elegans W01C9.2 (W01C9.2) mRNA, complete cds. 11/11 None
SNAP00000001839 ENSEMBL cdna:SNAP chromosome:CEL140:II:8536282:8538432:1 11/11 None
GENEFINDER00000001845 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8536282:8539115:1 9/11 None
W01C9.2 ENSEMBL cdna:known chromosome:CEL140:II:8536282:8538432:1 gene:W01C9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8536278-8538429(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W01C9.2
Entrez Gene 189089 Entrez gene
SwissProt Q23118 EMBL-EBI
WormBase CE02368 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90270 Hypothetical protein W01C9.2 [Caenorhabditis elegans] ref|NP_495803.1| W01C9.2 [Caenorhabditis elegans] 0.0
blast CAE57597 Hypothetical protein CBG00578 [Caenorhabditis briggsae] 1.0E-127
blast CAE57597 Hypothetical protein CBG00578 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:177851_AT
ggaattataatgcctcgtcaaccagcaagaaaattgcaaaaaaatcaagccgtcgatttt
cagagaagagataagagagatgcatctcctcagttgcagtttattgattctgagcaagaa
caagttgaaagtttatcagcaggtggagcatgggatacagtaccaattgaaaaaagtata
attgaatccattcacttggagcctcatccatattatcatttgaaaactgaaacaagaact
caagttgaaccaagtccaatggtaaccgaagcatctttagatgatgaatatgaaaaatat
gatgaagatgaaaatgaagttgaagtgagagacacccgtccaatgaaaaatggacttgtt
caagtttcactaaacgggaatacagtatccaatgcacccaaacggatgaaaatggtggca
ttgaactccgtgaaaaagattagcaaaaaggagaaaagtacaaatggattagcggttgtt
gctccaacggccaagaaacaaacaatgctcgaacttctgattggcgactttttgatgaga
gttcctccgactgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTATAATGCCTCGTCAACCAG 140 533 1117 Antisense
TCAAGCCGTCGATTTTCAGAGAAGA 121 631 1161 Antisense
GAGATGCATCTCCTCAGTTGCAGTT 261 397 1193 Antisense
GAATCCATTCACTTGGAGCCTCATC 467 329 1300 Antisense
GGAGCCTCATCCATATTATCATTTG 678 521 1314 Antisense
TGAAGTGAGAGACACCCGTCCAATG 497 573 1437 Antisense
ATACAGTATCCAATGCACCCAAACG 273 23 1496 Antisense
AAATGGTGGCATTGAACTCCGTGAA 670 119 1526 Antisense
TGGATTAGCGGTTGTTGCTCCAACG 673 549 1581 Antisense
CGAACTTCTGATTGGCGACTTTTTG 98 253 1626 Antisense
TTTGATGAGAGTTCCTCCGACTGCA 148 667 1647 Antisense
Sequence Source Affymetrix Proprietary Database