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[177850_at]

Description C50H2.7 /REP_DB=WormBase Gene ID /WP=CE05485 /TR=Q18765 /GB=CAA98255.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 11.7
(-2.3)
A 		10.3
(-2.4)
A 		3.4
(-3)
A 		77.9
(3)
A 		75
B 8.3
(3)
A 		6.3
(0.8)
A 		7.3
(1.9)
A 		2.8
(-3)
A 		6
C 8.2
(-2.9)
A 		25.3
(1.5)
A 		7.7
(-3)
A 		31.3
(3)
A 		24
avr 9.4
(-2.4) 		14
(-1.5) 		6.1
(-3) 		37.3
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 67.3
(3)
A 		16.4
(-2.3)
A 		9.7
(-3)
A 		9.7
(-3)
A 		39.3
(0.1)
A 		42.6
(0.4)
A 		58
B 10.8
(-3)
A 		26.1
(0.6)
A 		24.2
(0.1)
A 		14.7
(-2.1)
A 		24.5
(0.2)
A 		36.4
(3)
A 		26
C 1.5
(-3)
A 		52.7
(2.8)
A 		41.2
(1.5)
A 		54.8
(3)
A 		35.7
(0.8)
A 		34.4
(0.7)
A 		53
avr 26.5
(-2.3) 		31.7
(0.1) 		25
(-3) 		26.4
(-2.3) 		33.2
(0.8) 		37.8
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.2
(-1.1)
A 		2.2
(-2.3)
A 		0.9
(-3)
A 		11.4
(3)
A 		11
B 2.6
(3)
A 		1.5
(-0.3)
A 		1.7
(0.3)
A 		0.6
(-3)
A 		2
C 2.7
(-3)
A 		7.3
(3)
A 		2.7
(-3)
A 		5.3
(0.4)
A 		5
avr 3.2
(-0.9) 		3.7
(-0.2) 		1.8
(-3) 		5.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 12.4
(3)
A 		5.8
(-0.8)
A 		2.1
(-3)
A 		2.5
(-2.8)
A 		11.9
(2.7)
A 		10.4
(1.8)
A 		10
B 3.8
(-3)
A 		8.7
(-0)
A 		5.9
(-1.7)
A 		3.9
(-2.9)
A 		10
(0.8)
A 		13.6
(3)
A 		10
C 0.5
(-3)
A 		16.1
(3)
A 		10.5
(0.8)
A 		11
(1)
A 		11.5
(1.2)
A 		11.5
(1.2)
A 		16
avr 5.6
(-3) 		10.2
(1.5) 		6.2
(-2.4) 		5.8
(-2.8) 		11.1
(2.3) 		11.8
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12356
Sequence Type Exemplar sequence
Representative Public ID C50H2.7 NCBI
Target Description C50H2.7 /REP_DB=WormBase Gene ID /WP=CE05485 /TR=Q18765 /GB=CAA98255.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073154(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073154 NCBI Caenorhabditis elegans C50H2.7 (C50H2.7) mRNA, complete cds. 11/11 None
SNAP00000033471 ENSEMBL cdna:SNAP chromosome:CEL140:V:9925849:9926518:1 11/11 None
GENEFINDER00000033473 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9925849:9926886:1 11/11 None
C50H2.7 ENSEMBL cdna:known chromosome:CEL140:V:9925849:9926518:1 gene:C50H2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9925848-9926518(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50H2.7
Entrez Gene 183691 Entrez gene
SwissProt Q18765 EMBL-EBI
WormBase CE05485 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98255 Hypothetical protein C50H2.7 [Caenorhabditis elegans] ref|NP_505555.1| C50H2.7 [Caenorhabditis elegans] 8.0E-79
blast CAA98255 Hypothetical protein C50H2.7 [Caenorhabditis elegans] ref|NP_505555.1| C50H2.7 [Caenorhabditis elegans] 8.0E-64
Sequence
Target Sequence 
>C. ELEGANS:177850_AT
ggatcaagcaaatgaccccaaacgtcatgcgccttttgaaagcatgcttcgtggaacaga
ttccagacgaagtatgcgatgaatttcatctgaaaaaggatacggagcatatgattttga
tcacgaaagatggaggcatgccaattagcaagatcaaaccactgtcggacagtcaggtct
tgtctgtcttgtcgcaaattcttttgtcgctgtatatcgggaaaagggaacttcaattca
gccacaacgatctgaatcccggcaatctgctaatttctgagacgaagaaaaaatcgatca
gttacaaaaaagacggaaagtcgataaagatcaagagtcatggtcgattcctcacgctca
tcgatctccaaaaatcgacattcgatgaaaaagaagacaaaggattggattgctggaaat
tgaatagccgtgtgagagatcagtttcttccactcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCAAGCAAATGACCCCAAACGT 548 509 20 Antisense
CCCAAACGTCATGCGCCTTTTGAAA 5 259 36 Antisense
AAGCATGCTTCGTGGAACAGATTCC 386 151 59 Antisense
GCAAGATCAAACCACTGTCGGACAG 568 321 167 Antisense
CTGTCGGACAGTCAGGTCTTGTCTG 396 239 181 Antisense
GTCTTGTCTGTCTTGTCGCAAATTC 426 467 196 Antisense
GTCGCAAATTCTTTTGTCGCTGTAT 168 475 210 Antisense
GAACTTCAATTCAGCCACAACGATC 194 351 247 Antisense
CAACGATCTGAATCCCGGCAATCTG 617 185 264 Antisense
GATCAAGAGTCATGGTCGATTCCTC 506 421 348 Antisense
GTGAGAGATCAGTTTCTTCCACTCG 407 483 451 Antisense
Sequence Source Affymetrix Proprietary Database