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[177849_at]

Description T09F3.4 /REP_DB=WormBase Gene ID /WP=CE16374 /TR=Q22363 /GB=CAA88871.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 91      6grp_total > 88      4grp_total > 39      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 230.5
(3)
P 		151.1
(-1.4)
P 		122.6
(-3)
P 		127.1
(-2.7)
P 		108
B 181.1
(3)
P 		116.4
(-3)
P 		122.9
(-2.4)
P 		161.4
(1.2)
P 		65
C 183.3
(3)
P 		116.5
(-3)
P 		168
(1.6)
P 		146.9
(-0.3)
P 		67
avr 198.3
(3) 		128
(-3) 		137.8
(-2.2) 		145.1
(-1.5) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 172
(-2.8)
P 		166.5
(-3)
P 		208.9
(-1.5)
P 		211.2
(-1.4)
P 		218.4
(-1.2)
P 		335.5
(3)
P 		169
B 266.8
(-1.5)
P 		255.6
(-1.9)
P 		250.2
(-2.1)
P 		224.2
(-3)
P 		349.3
(1.4)
P 		396.6
(3)
P 		172
C 189.8
(-2.6)
P 		258.8
(-0.6)
P 		176.8
(-3)
P 		232.8
(-1.3)
P 		285.5
(0.2)
P 		379.1
(3)
P 		202
avr 209.5
(-3) 		227
(-2.3) 		212
(-2.9) 		222.7
(-2.5) 		284.4
(-0.2) 		370.4
(3) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 83.9
(3)
P 		32.8
(-1.7)
P 		32
(-1.8)
P 		18.6
(-3)
P 		65
B 57.8
(3)
P 		28.7
(-3)
P 		28.5
(-3)
P 		34.4
(-1.8)
P 		29
C 60.7
(3)
P 		33.5
(-1.5)
P 		58.6
(2.6)
P 		24.8
(-3)
P 		36
avr 67.5
(3) 		31.7
(-2.2) 		39.7
(-1) 		25.9
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 31.7
(-3)
P 		59.2
(0.3)
P 		45.5
(-1.3)
P 		53.6
(-0.4)
P 		65.9
(1.1)
P 		81.7
(3)
P 		50
B 92.8
(-0.7)
P 		85.1
(-1.3)
P 		60.8
(-2.9)
P 		59.4
(-3)
P 		141.9
(2.6)
P 		147.9
(3)
P 		89
C 70.4
(-1.1)
P 		79
(-0.5)
P 		45
(-3)
P 		46.8
(-2.9)
P 		92.4
(0.5)
P 		126.9
(3)
P 		82
avr 65
(-1.7) 		74.4
(-0.9) 		50.4
(-3) 		53.3
(-2.7) 		100.1
(1.4) 		118.8
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3342
Sequence Type Exemplar sequence
Representative Public ID T09F3.4 NCBI
Target Description T09F3.4 /REP_DB=WormBase Gene ID /WP=CE16374 /TR=Q22363 /GB=CAA88871.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027167 NCBI Caenorhabditis elegans T09F3.5 (T09F3.5) mRNA, complete cds. 11/11 None
SNAP00000009660 ENSEMBL cdna:SNAP chromosome:CEL140:II:10396788:10399130:1 11/11 None
GENEFINDER00000009661 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10395390:10399130:1 11/11 None
T09F3.5 ENSEMBL cdna:known chromosome:CEL140:II:10396788:10399230:1 gene:T09F3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10395386-10399127(+) 98.88 100.0
Public Domain and Genome References
Gene Title
Ensembl T09F3.5
Entrez Gene 3565885 Entrez gene
SwissProt Q7YTF8 EMBL-EBI
WormBase CE36504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE45098 Hypothetical protein T09F3.5 [Caenorhabditis elegans] ref|NP_001022338.1| T09F3.5 [Caenorhabditis elegans] 0.0
blast CAE59689 Hypothetical protein CBG03113 [Caenorhabditis briggsae] 0.0
blast CAE45098 Hypothetical protein T09F3.5 [Caenorhabditis elegans] ref|NP_001022338.1| T09F3.5 [Caenorhabditis elegans] 1.0E-136
blast CAA88871 Hypothetical protein T09F3.4 [Caenorhabditis elegans] ref|NP_496238.2| T09F3.4 [Caenorhabditis elegans] 1.0E-118
blast CAE59689 Hypothetical protein CBG03113 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009661 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:177849_AT
acagaagaacaccgaccgtataccggaaaattctatttcgatcgaatatgtgatttatgc
gcaagaatcgataatgtcaattttcgatatgaacttgaaagtgctgaatctgaaattgga
atggagttggagaagaagtgtacgcagggattatcatatgctctagtaggaaaagacaaa
tcagagtatgagctagagttggaggatttggtcagagataaggagtttcgacaggaagga
gttccaattgttcgcctttacaaaactggaaccgatttcaatgcaggctatgtatgggaa
gaatccgatggaattcaatgttgtgggacaccatcagttttaattcggatccttgaagaa
gctgttgccaggaatgaatcaactattctgattcgcgccgattcggaaaagctaatcaaa
agcttcgaggcgcttttggaggtctggcgtcgaaccggatggcgtaactctcaacacaaa
cgaatcgccaaatcagcagaatgggagaaggcgtggaacctgaaacagaaaatccacgtg
tgctgggagatcatgcagcctgtggacgaggatgaccggcggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGAAGAACACCGACCGTATACCG 281 109 1612 Antisense
GAAGTGTACGCAGGGATTATCATAT 683 335 1746 Antisense
GAAGGAGTTCCAATTGTTCGCCTTT 166 335 1846 Antisense
GGAACCGATTTCAATGCAGGCTATG 12 531 1879 Antisense
GTGGGACACCATCAGTTTTAATTCG 338 485 1934 Antisense
TATTCTGATTCGCGCCGATTCGGAA 472 663 1995 Antisense
TTCGAGGCGCTTTTGGAGGTCTGGC 463 695 2035 Antisense
GGATGGCGTAACTCTCAACACAAAC 611 511 2068 Antisense
GAAAATCCACGTGTGCTGGGAGATC 420 353 2139 Antisense
GAGATCATGCAGCCTGTGGACGAGG 599 395 2158 Antisense
TGTGGACGAGGATGACCGGCGGCAA 710 531 2172 Antisense
Sequence Source Affymetrix Proprietary Database