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[177848_at]

Description C36B1.8 /REP_DB=WormBase Gene ID /WP=CE05375 /TR=Q93342 /GB=CAB02273.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 96.1
(3)
A 		77.9
(0.7)
A 		78.4
(0.7)
A 		49.3
(-3)
A 		47
B 137.3
(2.9)
A 		55.5
(-2.4)
A 		46.4
(-3)
A 		138.8
(3)
A 		92
C 141.1
(3)
A 		101.1
(0.9)
A 		91.6
(0.4)
A 		28.2
(-3)
A 		113
avr 124.8
(3) 		78.2
(-2.3) 		72.1
(-3) 		72.1
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 67.2
(-3)
A 		166
(2.4)
P 		92.2
(-1.6)
A 		125
(0.1)
M 		159.3
(2)
A 		177.5
(3)
P 		110
B 102
(-1.4)
A 		156.7
(2.5)
A 		78.5
(-3)
A 		141.3
(1.4)
A 		91.9
(-2.1)
A 		164.3
(3)
P 		86
C 215.1
(3)
P 		124.1
(-1.5)
A 		172.4
(0.9)
A 		94
(-3)
A 		130.7
(-1.2)
P 		155.5
(0)
P 		121
avr 128.1
(-1.4) 		148.9
(1) 		114.4
(-3) 		120.1
(-2.3) 		127.3
(-1.5) 		165.8
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 35
(3)
A 		16.9
(-0.9)
A 		20.5
(-0.1)
A 		7.2
(-3)
A 		28
B 43.8
(3)
A 		13.7
(-2.5)
A 		10.7
(-3)
A 		29.6
(0.4)
A 		33
C 46.7
(3)
A 		29.1
(0.5)
A 		31.9
(0.9)
A 		4.8
(-3)
A 		42
avr 41.8
(3) 		19.9
(-1.7) 		21
(-1.5) 		13.9
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 12.4
(-3)
A 		59
(3)
P 		20.1
(-2)
A 		31.7
(-0.5)
M 		48.1
(1.6)
A 		43.2
(1)
P 		47
B 35.5
(-0.7)
A 		52.2
(1.7)
A 		19.1
(-3)
A 		37.4
(-0.4)
A 		37.3
(-0.4)
A 		61.3
(3)
P 		42
C 79.7
(3)
P 		37.9
(-1.1)
A 		43.9
(-0.5)
A 		18.9
(-3)
A 		42.3
(-0.7)
P 		52.1
(0.3)
P 		61
avr 42.5
(0.6) 		49.7
(2.4) 		27.7
(-3) 		29.3
(-2.6) 		42.6
(0.6) 		52.2
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2371
Sequence Type Exemplar sequence
Representative Public ID C36B1.8 NCBI
Target Description C36B1.8 /REP_DB=WormBase Gene ID /WP=CE05375 /TR=Q93342 /GB=CAB02273.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182082(11), NM_059964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182082 NCBI Caenorhabditis elegans C36B1.8b (C36B1.8) mRNA, complete cds. 11/11 None
NM_059964 NCBI Caenorhabditis elegans C36B1.8a (C36B1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000022516 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8745197:8750072:1 10/11 None
C36B1.8b ENSEMBL cdna:known chromosome:CEL140:I:8745197:8750655:1 gene:C36B1.8 11/11 A 
C36B1.8a ENSEMBL cdna:known chromosome:CEL140:I:8745197:8750072:1 gene:C36B1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022504 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8745127-8750003(+) 99.2 100.0
Public Domain and Genome References
Ensembl C36B1.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56562 Hypothetical protein C36B1.8b [Caenorhabditis elegans] ref|NP_871882.2| C36B1.8b [Caenorhabditis elegans] 0.0
blast CAB02273 Hypothetical protein C36B1.8a [Caenorhabditis elegans] ref|NP_492365.3| C36B1.8a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177848_AT
acgtgccaaatctccagttcgttacttcaaacgaaatgcaacaggaagcattgacccgat
tgaattgcctgtcaatatgcaaccattcctttattcaaatatcccgcaaacacaagtgca
gacgctgttcccaagttgctctaattgtggcggtcctcacgctccgaaacactgtgaaaa
acaaacattgttatcgaagaaaggtgatcatagaactcgttcagacggggaaggttctca
gcaaaatggtggaacttcctcttccaattcatacgctccaattcatgcaaacctccccca
tgcagtatacattgaaaatccgcaagcaatgttaggatcaaatcacttcaatcatcatca
acaacagcacataattcagaatactatattccataatggtggacaatttcgtgcaaacgg
aacatatgaaccgcaaattccgatagcatact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTGCCAAATCTCCAGTTCGTTAC 56 95 2862 Antisense
AGCATTGACCCGATTGAATTGCCTG 267 77 2908 Antisense
GCCTGTCAATATGCAACCATTCCTT 499 281 2928 Antisense
AACACAAGTGCAGACGCTGTTCCCA 668 127 2970 Antisense
AGTTGCTCTAATTGTGGCGGTCCTC 567 63 2995 Antisense
TCCTCACGCTCCGAAACACTGTGAA 275 593 3015 Antisense
GTTCAGACGGGGAAGGTTCTCAGCA 275 445 3080 Antisense
ATGGTGGAACTTCCTCTTCCAATTC 275 51 3107 Antisense
ATACGCTCCAATTCATGCAAACCTC 453 23 3132 Antisense
CCTCCCCCATGCAGTATACATTGAA 682 265 3153 Antisense
GAACCGCAAATTCCGATAGCATACT 252 347 3289 Antisense
Sequence Source Affymetrix Proprietary Database