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[177847_at]

Description E02H4.2 /REP_DB=WormBase Gene ID /WP=CE05548 /TR=Q19039 /GB=CAA91976.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 6.1
(-2.8)
A 		5.9
(-3)
A 		13.1
(3)
A 		7.4
(-1.8)
A 		7
B 3.9
(-2.7)
A 		3
(-3)
A 		5.6
(-2.2)
A 		23.3
(3)
A 		20
C 1.8
(-3)
A 		6.2
(-2.2)
A 		1.6
(-3)
A 		34.9
(3)
A 		33
avr 3.9
(-3) 		5
(-2.6) 		6.8
(-2) 		21.9
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.7
(1.5)
A 		2.7
(-2.1)
A 		5.5
(3)
A 		2.2
(-3)
A 		5
(2.1)
A 		4
(0.3)
A 		3
B 3.8
(0.1)
A 		2.6
(-1.5)
A 		2.7
(-1.3)
A 		3.4
(-0.4)
A 		6.1
(3)
A 		1.4
(-3)
A 		5
C 2.7
(-2.7)
A 		3
(-2.6)
A 		2.2
(-3)
A 		3.7
(-2.2)
A 		13.4
(3)
A 		6.6
(-0.6)
A 		11
avr 3.7
(-2) 		2.8
(-3) 		3.5
(-2.2) 		3.1
(-2.7) 		8.2
(3) 		4
(-1.7) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.2
(-0.1)
A 		1.3
(-2.5)
A 		3.4
(3)
A 		1.1
(-3)
A 		2
B 1.2
(-2.4)
A 		0.8
(-3)
A 		1.3
(-2.3)
A 		5
(3)
A 		4
C 0.6
(-3)
A 		1.8
(-1.6)
A 		0.6
(-3)
A 		5.9
(3)
A 		5
avr 1.3
(-3) 		1.3
(-3) 		1.8
(-1.9) 		4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.9
(-1)
A 		0.9
(-1)
A 		1.2
(1)
A 		0.6
(-3)
A 		1.5
(3)
A 		1
(-0.3)
A 		1
B 1.3
(-0.6)
A 		0.9
(-1.8)
A 		0.7
(-2.4)
A 		0.9
(-1.8)
A 		2.5
(3)
A 		0.5
(-3)
A 		2
C 1
(-2.4)
A 		0.9
(-2.5)
A 		0.6
(-3)
A 		0.7
(-2.8)
A 		4.4
(3)
A 		2.2
(-0.5)
A 		4
avr 1.1
(-1.9) 		0.9
(-2.4) 		0.8
(-2.7) 		0.7
(-3) 		2.8
(3) 		1.2
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17679
Sequence Type Exemplar sequence
Representative Public ID E02H4.2 NCBI
Target Description E02H4.2 /REP_DB=WormBase Gene ID /WP=CE05548 /TR=Q19039 /GB=CAA91976.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077980 NCBI Caenorhabditis elegans E02H4.2 (E02H4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000016456 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14277283:14281518:-1 11/11 None
SNAP00000016453 ENSEMBL cdna:SNAP chromosome:CEL140:X:14278378:14281518:-1 11/11 None
E02H4.2 ENSEMBL cdna:known chromosome:CEL140:X:14278378:14281518:-1 gene:E02H4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14278377-14281518(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02H4.2
Entrez Gene 183994 Entrez gene
SwissProt Q19039 EMBL-EBI
WormBase CE35447 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91976 Hypothetical protein E02H4.2 [Caenorhabditis elegans] ref|NP_510381.2| E02H4.2 [Caenorhabditis elegans] 0.0
blast CAA91976 Hypothetical protein E02H4.2 [Caenorhabditis elegans] ref|NP_510381.2| E02H4.2 [Caenorhabditis elegans] 1.0E-141
Sequence
Target Sequence 
>C. ELEGANS:177847_AT
gcttgatcgcagatgtcgccgagaatgagagcccgaatgagacagggcctgctgaattca
atattttttgtactgtaccggaacaatcttctaaacgctcagagcccgacgttatagttt
ctgctgcaaaatcagttactgaagttgaaaatacaatacttgctgaacatgataccgcta
ctgctgaaaacttttcgaacaacgatgaaccaattcttcttagcgttactaatcttcacg
atgaaacaaataacaaatcaatagatgtatcactgaatcacccattgccaccttcgacag
aaactggagttgtcagcggcaaagtttcacaattggaggcaccaatcagtacaattgtgc
aggaaacgatccgaatcctcgccgagagaaatctactccgtgacatcaatgactttcatc
aagaaatacatttgaatgtcatgcaagaaaatattggacagtctctagatcatgctgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGATCGCAGATGTCGCCGAGAA 340 307 1184 Antisense
GAGACAGGGCCTGCTGAATTCAATA 550 393 1222 Antisense
AATCTTCTAAACGCTCAGAGCCCGA 145 149 1268 Antisense
GAGCCCGACGTTATAGTTTCTGCTG 251 385 1285 Antisense
TGCTGAACATGATACCGCTACTGCT 186 583 1344 Antisense
GAACCAATTCTTCTTAGCGTTACTA 489 185 1390 Antisense
TGTATCACTGAATCACCCATTGCCA 177 561 1449 Antisense
CATTGCCACCTTCGACAGAAACTGG 443 217 1466 Antisense
GCAGGAAACGATCCGAATCCTCGCC 393 311 1542 Antisense
GAAATCTACTCCGTGACATCAATGA 76 363 1571 Antisense
GGACAGTCTCTAGATCATGCTGCAA 209 525 1639 Antisense
Sequence Source Affymetrix Proprietary Database