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[177845_at]

Description C06C6.6 /REP_DB=WormBase Gene ID /WP=CE15600 /TR=O62032 /GB=CAB07556.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 25.6
(-0.2)
A 		2.3
(-3)
A 		6.1
(-2.5)
A 		52.7
(3)
A 		50
B 7.1
(3)
A 		4.6
(-0.2)
A 		3
(-2.2)
A 		2.4
(-3)
A 		5
C 5.4
(-2.6)
A 		4.3
(-2.8)
A 		3
(-3)
A 		35.6
(3)
A 		33
avr 12.7
(-1) 		3.7
(-3) 		4
(-2.9) 		30.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 8.6
(-2)
A 		6.8
(-2.3)
A 		2.2
(-2.9)
A 		3.2
(-2.8)
A 		1.7
(-3)
A 		43.9
(3)
A 		42
B 1.8
(-2)
A 		1.9
(-1.9)
A 		4.8
(1.3)
A 		2.3
(-1.4)
A 		6.3
(3)
A 		0.9
(-3)
A 		5
C 2.6
(-2.8)
A 		1.5
(-3)
A 		7.1
(-1.8)
A 		29.7
(3)
A 		2.7
(-2.7)
A 		5.3
(-2.2)
A 		28
avr 4.3
(-2.6) 		3.4
(-3) 		4.7
(-2.4) 		11.7
(0.7) 		3.6
(-2.9) 		16.7
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.3
(3)
A 		0.5
(-3)
A 		1.6
(-2.3)
A 		7.7
(1.9)
A 		9
B 2.3
(3)
A 		1.1
(-1)
A 		0.7
(-2.3)
A 		0.5
(-3)
A 		2
C 1.8
(-2.1)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		6
(3)
A 		5
avr 4.5
(2.7) 		1
(-3) 		1.1
(-2.8) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.6
(-2.4)
A 		2.4
(-1.9)
A 		0.5
(-3)
A 		0.8
(-2.8)
A 		0.5
(-3)
A 		10.7
(3)
A 		10
B 0.6
(-2.2)
A 		0.6
(-2.2)
A 		1.2
(-0.5)
A 		0.6
(-2.2)
A 		2.5
(3)
A 		0.3
(-3)
A 		2
C 1
(-2.5)
A 		0.5
(-3)
A 		1.8
(-1.6)
A 		6
(3)
A 		0.9
(-2.6)
A 		1.8
(-1.6)
A 		6
avr 1.1
(-3) 		1.2
(-2.8) 		1.2
(-2.8) 		2.5
(-0.4) 		1.3
(-2.6) 		4.3
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177845_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12735
Sequence Type Exemplar sequence
Representative Public ID C06C6.6 NCBI
Target Description C06C6.6 /REP_DB=WormBase Gene ID /WP=CE15600 /TR=O62032 /GB=CAB07556.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074610 NCBI Caenorhabditis elegans C06C6.6 (C06C6.6) mRNA, complete cds. 11/11 None
SNAP00000040507 ENSEMBL cdna:SNAP chromosome:CEL140:V:15991464:15994190:1 9/11 None
C06C6.6 ENSEMBL cdna:known chromosome:CEL140:V:15991337:15994190:1 gene:C06C6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040518 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15991336-15994190(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06C6.6
Entrez Gene 182309 Entrez gene
SwissProt O62032 EMBL-EBI
WormBase CE15600 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07556 Hypothetical protein C06C6.6 [Caenorhabditis elegans] ref|NP_507011.1| C06C6.6 [Caenorhabditis elegans] 0.0
blast AAC26299 Hypothetical protein Y57G7A.6 [Caenorhabditis elegans] ref|NP_493938.1| Y57G7A.6 [Caenorhabditis elegans] 0.0
blast CAB07557 Hypothetical protein C06C6.7 [Caenorhabditis elegans] ref|NP_507012.1| C06C6.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 6.3E-22
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 6.3E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507011.1 1 5-24
C06C6.6 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:177845_AT
atgttcctttccgatactagcatctgggaaaaatccattgcaattaagaagaattcgaat
ctatccgcttatggacaaatgttcaaagatttgacaattctcaattccatcgatgtgaaa
cttgagccaagattggcggctactgaaggatttgataacatcacaacgaatcaaagagtt
acacagatagtggctgaatttcgagaatctctcataagactttccaagttggatcttgat
ttttcacgctacaaatctgcgttggatagtatgccggaggtgttgaagtctgtttcggaa
aaacttataaaagatgtttcgaggctgaaagcaaatgagttaccgatcacgcctccggca
aggactccaacagtctctcctgccaagtcaccagccaattcagtttacaaatctgaaaaa
cttaataaagatgtttcgaggctgaaagcaaatgcaaaaccgagcccgatagttatgaaa
agcattatggatgttgtggagaacaagagtaagacccatgaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCCTTTCCGATACTAGCATCT 366 47 1954 Antisense
CAATTCTCAATTCCATCGATGTGAA 393 179 2048 Antisense
GAATCTCTCATAAGACTTTCCAAGT 247 329 2158 Antisense
TGGATCTTGATTTTTCACGCTACAA 139 551 2183 Antisense
TCTGCGTTGGATAGTATGCCGGAGG 370 609 2209 Antisense
TGCCGGAGGTGTTGAAGTCTGTTTC 700 583 2225 Antisense
CAAATGAGTTACCGATCACGCCTCC 409 193 2285 Antisense
AAGTCACCAGCCAATTCAGTTTACA 460 157 2338 Antisense
AAGCAAATGCAAAACCGAGCCCGAT 211 151 2399 Antisense
ACCGAGCCCGATAGTTATGAAAAGC 612 87 2412 Antisense
AGAACAAGAGTAAGACCCATGAGGT 118 71 2453 Antisense
Sequence Source Affymetrix Proprietary Database