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[177843_at]

Description F57G8.3 /REP_DB=WormBase Gene ID /WP=CE18776 /TR=Q9XU90 /GB=CAB05533.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 02      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 10.9
(-2.4)
A 		3.5
(-3)
A 		5.7
(-2.8)
A 		75.3
(3)
A 		72
B 4.5
(2.3)
A 		4.8
(3)
A 		4.3
(1.8)
A 		2.4
(-3)
A 		2
C 2.2
(-3)
A 		11.2
(-2.1)
A 		2.1
(-3)
A 		62
(3)
A 		60
avr 5.9
(-2.7) 		6.5
(-2.6) 		4
(-3) 		46.6
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8.6
(-1.2)
A 		7.2
(-1.5)
A 		24.2
(3)
A 		1.7
(-3)
A 		16.7
(1)
A 		5.5
(-2)
A 		23
B 16.1
(3)
A 		11.2
(0.9)
A 		2.4
(-2.7)
A 		1.8
(-3)
A 		2.2
(-2.8)
A 		3.5
(-2.3)
A 		14
C 1.7
(-3)
A 		7.4
(3)
A 		7.3
(2.9)
A 		4.1
(-0.5)
A 		2.5
(-2.2)
A 		5
(0.5)
A 		6
avr 8.8
(1.3) 		8.6
(1.2) 		11.3
(3) 		2.5
(-3) 		7.1
(0.1) 		4.7
(-1.5) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4
(-1.1)
A 		0.8
(-3)
A 		1.5
(-2.6)
A 		11
(3)
A 		10
B 1.4
(3)
A 		1.2
(1.7)
A 		1
(0.3)
A 		0.5
(-3)
A 		1
C 0.7
(-3)
A 		3.2
(-1.5)
A 		0.7
(-3)
A 		10.5
(3)
A 		10
avr 2
(-2.1) 		1.7
(-2.4) 		1.1
(-3) 		7.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.6
(-1.5)
A 		2.6
(-0.3)
A 		5.3
(3)
A 		0.4
(-3)
A 		5
(2.6)
A 		1.3
(-1.9)
A 		5
B 5.6
(3)
A 		3.7
(0.8)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		0.9
(-2.5)
A 		1.3
(-2.1)
A 		5
C 0.6
(-3)
A 		2.3
(3)
A 		1.8
(1.2)
A 		0.8
(-2.3)
A 		0.8
(-2.3)
A 		1.7
(0.9)
A 		2
avr 2.6
(2.2) 		2.9
(3) 		2.6
(2.2) 		0.6
(-3) 		2.2
(1.2) 		1.4
(-0.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177843_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12713
Sequence Type Exemplar sequence
Representative Public ID F57G8.3 NCBI
Target Description F57G8.3 /REP_DB=WormBase Gene ID /WP=CE18776 /TR=Q9XU90 /GB=CAB05533.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074727(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074727 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-167) (srh-167) mRNA, complete cds. 10/11 None
GENEFINDER00000042081 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16336295:16337646:1 11/11 None
F57G8.3 ENSEMBL cdna:known chromosome:CEL140:V:16336295:16337646:1 gene:F57G8.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16336294-16337646(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-167
Ensembl F57G8.3
Entrez Gene 186466 Entrez gene
SwissProt Q9XU90 EMBL-EBI
WormBase CE34191 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05533 Hypothetical protein F57G8.3 [Caenorhabditis elegans] ref|NP_507128.2| Serpentine Receptor, class H family member (srh-167) [Caenorhabditis elegans] 0.0
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 1.0E-100
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 4.0E-96
blast CAB60391 Hypothetical protein Y60A3A.3 [Caenorhabditis elegans] ref|NP_507867.1| Serpentine Receptor, class H family member (srh-183) [Caenorhabditis elegans] 1.0E-93
blast CAB04998 Hypothetical protein ZK228.7 [Caenorhabditis elegans] ref|NP_507618.1| Serpentine Receptor, class H family member (srh-179) [Caenorhabditis elegans] 9.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507128.2 7 15-37,57-79,94-116,141-160,202-224,245-267,282-304
F57G8.3 7 15-37,57-79,94-116,141-160,202-224,245-267,282-304
GENEFINDER00000042081 7 15-37,57-79,94-116,141-160,201-223,244-266,303-325
Sequence
Target Sequence 
>C. ELEGANS:177843_AT
tgttcgcgatgctttttatttctccttgctatttcaatattcccgatcaagaaatcgaga
aattaactatcaatgaacgaataccctgcttgccagaagaaatcctctcccgtactggct
ttttcattctgtcaattgaaaacagggaaatgtatataagtcttgcattattgatttctg
ttctcgttcctgaagtattgttttttgttctttctatcttctggcacctttttaatataa
agtcacaatcacgggcaaccaatcgactccaaaagcaattgttttttgcaatgtgcttgc
aagtatacattccttttatggtcgtaaccatacctgcggcgtattgtatatcttcaatag
tttttggtcattacaaccagggattttttttgtggttcctcccccccccccccctagcca
actttaatttagaaattcgtaccactgctacaaatcttgccatgtcttcaatagcagttc
atggaatcctattaacaattaccatgctcattgtgcacgcaccttatcgtcaagcggtct
tag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCGCGATGCTTTTTATTTCTCC 105 563 449 Antisense
TTTTTATTTCTCCTTGCTATTTCAA 543 675 461 Antisense
GCTATTTCAATATTCCCGATCAAGA 666 303 476 Antisense
CAATGAACGAATACCCTGCTTGCCA 99 183 519 Antisense
TTTCTGTTCTCGTTCCTGAAGTATT 497 671 623 Antisense
ACAATCACGGGCAACCAATCGACTC 186 113 693 Antisense
TACATTCCTTTTATGGTCGTAACCA 546 635 754 Antisense
GTAACCATACCTGCGGCGTATTGTA 28 463 772 Antisense
GAAATTCGTACCACTGCTACAAATC 214 361 880 Antisense
GCTACAAATCTTGCCATGTCTTCAA 455 301 895 Antisense
GCACCTTATCGTCAAGCGGTCTTAG 323 287 967 Antisense
Sequence Source Affymetrix Proprietary Database