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[177842_at]

Description T22C8.6 /REP_DB=WormBase Gene ID /WP=CE02354 /TR=Q22679 /GB=CAA88878.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 92      6grp_total > 66      4grp_total > 16      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 667
1 2 3 4 range
A 114.3
(-3)
P 		277.2
(-1)
P 		400.2
(0.5)
P 		604.6
(3)
P 		490
B 126.7
(-3)
P 		319.9
(-1.2)
P 		350.3
(-1)
P 		781.7
(3)
P 		655
C 124.6
(-3)
P 		284.8
(-1.3)
P 		392.5
(-0.2)
P 		706.4
(3)
P 		582
avr 121.9
(-3) 		294
(-1.2) 		381
(-0.3) 		697.6
(3) 		576

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 168.1
(-3)
P 		343.1
(1.6)
P 		316.3
(0.9)
P 		266.3
(-0.4)
P 		230.8
(-1.4)
P 		396.2
(3)
P 		228
B 183.6
(-3)
P 		336.5
(1.8)
P 		303
(0.7)
P 		183
(-3)
P 		235.9
(-1.4)
P 		375.7
(3)
P 		193
C 179.7
(-3)
P 		321.8
(0.4)
P 		245.5
(-1.4)
P 		213.3
(-2.2)
P 		232.8
(-1.7)
P 		427
(3)
P 		247
avr 177.1
(-3) 		333.8
(1.2) 		288.3
(-0) 		220.9
(-1.8) 		233.2
(-1.5) 		399.6
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 41.6
(-3)
P 		60.2
(-1.2)
P 		104.6
(3)
P 		88.5
(1.5)
P 		63
B 40.4
(-3)
P 		79
(-1.2)
P 		81.2
(-1.1)
P 		166.6
(3)
P 		126
C 41.2
(-3)
P 		81.9
(-0.4)
P 		136.8
(3)
P 		119.1
(1.9)
P 		96
avr 41.1
(-3) 		73.7
(-0.7) 		107.5
(1.8) 		124.7
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 31
(-3)
P 		122
(3)
P 		68.9
(-0.5)
P 		67.5
(-0.6)
P 		69.7
(-0.4)
P 		96.5
(1.3)
P 		91
B 63.9
(-2)
P 		112
(1.2)
P 		73.6
(-1.4)
P 		48.5
(-3)
P 		95.8
(0.1)
P 		140.1
(3)
P 		92
C 66.6
(-1.6)
P 		98.2
(0.3)
P 		62.5
(-1.8)
P 		42.9
(-3)
P 		75.3
(-1.1)
P 		142.9
(3)
P 		100
avr 53.8
(-2.9) 		110.7
(1.7) 		68.3
(-1.8) 		53
(-3) 		80.3
(-0.8) 		126.5
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177842_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2894
Sequence Type Exemplar sequence
Representative Public ID T22C8.6 NCBI
Target Description T22C8.6 /REP_DB=WormBase Gene ID /WP=CE02354 /TR=Q22679 /GB=CAA88878.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063433 NCBI Caenorhabditis elegans T22C8.6 (T22C8.6) mRNA, complete cds. 11/11 None
SNAP00000014911 ENSEMBL cdna:SNAP chromosome:CEL140:II:8627786:8629510:-1 11/11 None
GENEFINDER00000014914 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8627786:8629510:-1 11/11 None
T22C8.6 ENSEMBL cdna:known chromosome:CEL140:II:8627786:8629510:-1 gene:T22C8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8627782-8629507(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22C8.6
Entrez Gene 188734 Entrez gene
SwissProt Q22679 EMBL-EBI
WormBase CE02354 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88878 Hypothetical protein T22C8.6 [Caenorhabditis elegans] ref|NP_495834.1| T22C8.6 [Caenorhabditis elegans] 1.0E-160
blast CAE57552 Hypothetical protein CBG00530 [Caenorhabditis briggsae] 1.0E-141
blast AAA68359 Hypothetical protein E04F6.6 [Caenorhabditis elegans] ref|NP_495495.1| E04F6.6 [Caenorhabditis elegans] 4.0E-51
Sequence
Target Sequence 
>C. ELEGANS:177842_AT
gggtgatccactgggagcgattgcaaacagttttgattctggggtcaacatcaatcttgc
aaatgtcgatgtgaagggtattccctattatccacttaatgaagaaggagctgttggagt
tggagttggattgggaattccatttggagcatggggtggaggtgcttcaacatctgtagg
agtgagagactacttccacggagatcaagaagttggagccaattggtatgatggaaagta
tggatacaagaatcactggaacattccacttgttcaatctctgggagttgaaggtggtca
gcacaatacggtgtcattcccattacacggaaaagacgctggaaatttgaaagttgacaa
cggatacggagtcggtggttactatcagcaaaatgatcatgttggagtgaattacaagga
aggagatgttcgacacacattcggagttagttctccgtttgttggagcaggtttccagac
tggacaggctgttgcatttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGATCCACTGGGAGCGATTGCA 697 497 381 Antisense
TCTGGGGTCAACATCAATCTTGCAA 626 607 418 Antisense
GGTATTCCCTATTATCCACTTAATG 196 505 457 Antisense
GGTGGAGGTGCTTCAACATCTGTAG 422 499 535 Antisense
GAGAGACTACTTCCACGGAGATCAA 393 393 564 Antisense
ACATTCCACTTGTTCAATCTCTGGG 387 105 641 Antisense
GGTGGTCAGCACAATACGGTGTCAT 489 499 673 Antisense
TACGGTGTCATTCCCATTACACGGA 582 647 687 Antisense
ACGGAGTCGGTGGTTACTATCAGCA 686 95 746 Antisense
GTTGGAGCAGGTTTCCAGACTGGAC 269 435 841 Antisense
GACTGGACAGGCTGTTGCATTTCCT 14 399 858 Antisense
Sequence Source Affymetrix Proprietary Database