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[177841_at]

Description C14B4.1 /REP_DB=WormBase Gene ID /WP=CE15616 /TR=O45250 /GB=CAB03886.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 7.2
(-3)
A 		9.5
(-0.7)
A 		7.7
(-2.5)
A 		13.3
(3)
A 		6
B 9
(-0.2)
A 		14
(3)
A 		4.7
(-3)
A 		5.2
(-2.7)
A 		9
C 6.7
(-3)
A 		7.7
(-2.9)
A 		15.8
(-2.2)
A 		71.7
(3)
A 		65
avr 7.6
(-3) 		10.4
(-2.3) 		9.4
(-2.5) 		30.1
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 3.3
(-2.5)
A 		10.5
(3)
A 		5.5
(-0.8)
A 		2.6
(-3)
A 		5.2
(-1)
A 		3.5
(-2.3)
A 		8
B 6.8
(-1.1)
A 		4.9
(-2.5)
A 		12.6
(3)
A 		7.1
(-0.9)
A 		4.2
(-3)
A 		6.8
(-1.1)
A 		8
C 4
(-2.7)
A 		5.6
(-2.5)
A 		8.3
(-2.2)
A 		50.5
(3)
A 		3
(-2.8)
A 		1.7
(-3)
A 		49
avr 4.7
(-2.7) 		7
(-1.9) 		8.8
(-1.2) 		20.1
(3) 		4.1
(-3) 		4
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.6
(3)
A 		2.1
(-2)
A 		2
(-3)
A 		2
(-3)
A 		1
B 2.9
(1.7)
A 		3.4
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		2
C 2.2
(-3)
A 		2.2
(-3)
A 		5.5
(-1)
A 		12.1
(3)
A 		10
avr 2.6
(-3) 		2.6
(-3) 		2.9
(-2.3) 		5.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.6
(-3)
A 		3.7
(3)
A 		1.2
(-1.8)
A 		0.7
(-2.8)
A 		1.6
(-1.1)
A 		0.8
(-2.6)
A 		3
B 2.4
(0.2)
A 		1.6
(-3)
A 		3.1
(3)
A 		1.9
(-1.8)
A 		1.7
(-2.6)
A 		2.5
(0.6)
A 		2
C 1.5
(-2.4)
A 		1.7
(-2.3)
A 		2.1
(-2.1)
A 		10.2
(3)
A 		1
(-2.8)
A 		0.6
(-3)
A 		10
avr 1.5
(-2.6) 		2.3
(-1) 		2.1
(-1.4) 		4.3
(3) 		1.4
(-2.8) 		1.3
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177841_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14773
Sequence Type Exemplar sequence
Representative Public ID C14B4.1 NCBI
Target Description C14B4.1 /REP_DB=WormBase Gene ID /WP=CE15616 /TR=O45250 /GB=CAB03886.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075367 NCBI Caenorhabditis elegans C14B4.1 (C14B4.1) mRNA, complete cds. 11/11 None
SNAP00000034123 ENSEMBL cdna:SNAP chromosome:CEL140:V:19347311:19352060:-1 11/11 None
GENEFINDER00000034124 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19346808:19352334:-1 11/11 None
C14B4.1 ENSEMBL cdna:known chromosome:CEL140:V:19349464:19350015:-1 gene:C14B4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19349463-19350015(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14B4.1
Entrez Gene 182594 Entrez gene
SwissProt O45250 EMBL-EBI
WormBase CE15616 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE61689 Hypothetical protein CBG05635 [Caenorhabditis briggsae] 0.0
blast CAB03966 Hypothetical protein C14B4.2 [Caenorhabditis elegans] emb|CAB03887.1| Hypothetical protein C14B4.2 [Caenorhabditis elegans] ref|NP_507767.1| C14B4.2 [Caenorhabditis elegans] 4.0E-97
blast CAB03966 Hypothetical protein C14B4.2 [Caenorhabditis elegans] emb|CAB03887.1| Hypothetical protein C14B4.2 [Caenorhabditis elegans] ref|NP_507767.1| C14B4.2 [Caenorhabditis elegans] 1.0E-90
blast CAB03886 Hypothetical protein C14B4.1 [Caenorhabditis elegans] ref|NP_507768.1| C14B4.1 [Caenorhabditis elegans] 2.0E-81
blast CAB03886 Hypothetical protein C14B4.1 [Caenorhabditis elegans] ref|NP_507768.1| C14B4.1 [Caenorhabditis elegans] 4.0E-77
blast CAB03886 Hypothetical protein C14B4.1 [Caenorhabditis elegans] ref|NP_507768.1| C14B4.1 [Caenorhabditis elegans] 5.0E-77
blast CAE61689 Hypothetical protein CBG05635 [Caenorhabditis briggsae] 4.0E-70
Sequence
Target Sequence 
>C. ELEGANS:177841_AT
tctcctgtaacctggtgcacattggagttgacggagcaattggagcatttaaaggtgtca
ttgctcaaaatcttcacttatcgatagcaggagatctcgcgaattatggaagaatcgccg
ccaaggatcagatttttctcgaaatttttggctcccaaatgtcgctgtccgatgggtctc
tggacagtgctggaaggggctataatgctctgaaaaagctcagaaaagtcgctgaaaata
gcatttcaagcccatcatcaagcacaatgcacagtgcaattcaatctcaaaatgcttcag
ttgtagcgaatatgatcgagaaaggaatcgacttgaatgacacttttcggtcacagaaat
cgaaaaaattgactctgaaacagtctgcagtggctgagtacaaagaagctagggaaaagt
caaaaatgaattcagttcgtgaacggattacactgattaatgctctttttgtggctcacg
agtggaggagaggcagtgttcaggcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCTGTAACCTGGTGCACATTGG 365 609 26 Antisense
GTCATTGCTCAAAATCTTCACTTAT 46 469 82 Antisense
GCAGGAGATCTCGCGAATTATGGAA 430 311 112 Antisense
GAAGAATCGCCGCCAAGGATCAGAT 412 341 134 Antisense
CCAAATGTCGCTGTCCGATGGGTCT 38 277 180 Antisense
GATGGGTCTCTGGACAGTGCTGGAA 213 409 196 Antisense
AAATAGCATTTCAAGCCCATCATCA 703 115 261 Antisense
AGCCCATCATCAAGCACAATGCACA 289 83 274 Antisense
GAAACAGTCTGCAGTGGCTGAGTAC 115 357 402 Antisense
TTAATGCTCTTTTTGTGGCTCACGA 661 683 482 Antisense
GGAGGAGAGGCAGTGTTCAGGCGAA 144 515 509 Antisense
Sequence Source Affymetrix Proprietary Database