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[177839_s_at]

Description Y69H2.4 /REP_DB=WormBase Gene ID /WP=CE22822 /TR=Q9U1U6 /GB=CAB63401.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 50      6grp_total > 07      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1158
1 2 3 4 range
A 1734
(3)
P 		1086.1
(-0.4)
P 		576.4
(-3)
P 		1550.2
(2)
P 		1158
B 1490.8
(2.4)
P 		827.5
(-1.8)
P 		631.6
(-3)
P 		1583.9
(3)
P 		952
C 1655.2
(3)
P 		764.5
(-2)
P 		589.3
(-3)
P 		1447
(1.8)
P 		1066
avr 1626.7
(3) 		892.7
(-1.3) 		599.1
(-3) 		1527
(2.4) 		1028

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 740
1 2 3 4 5 6 range
A 966
(3)
P 		551.5
(-0.4)
P 		471.7
(-1.1)
P 		419.1
(-1.5)
P 		240.6
(-3)
P 		369
(-1.9)
P 		725
B 857.3
(3)
P 		554.7
(0.1)
P 		645
(1)
P 		417.4
(-1.2)
P 		226.2
(-3)
P 		400.7
(-1.3)
P 		631
C 904.7
(3)
P 		585.5
(0.1)
P 		582.3
(0.1)
P 		371.9
(-1.9)
P 		355.9
(-2)
P 		246
(-3)
P 		659
avr 909.3
(3) 		563.9
(-0.3) 		566.3
(-0.2) 		402.8
(-1.8) 		274.2
(-3) 		338.6
(-2.4) 		635
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 485
1 2 3 4 range
A 631.4
(3)
P 		235.8
(-1.9)
P 		150.7
(-3)
P 		226.9
(-2)
P 		481
B 475.4
(3)
P 		204.4
(-1.9)
P 		146.3
(-3)
P 		337.5
(0.5)
P 		329
C 547.9
(3)
P 		219.8
(-2.7)
P 		205.4
(-3)
P 		244
(-2.3)
P 		343
avr 551.6
(3) 		220
(-2.2) 		167.5
(-3) 		269.5
(-1.4) 		384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 178.1
(2.1)
P 		196.1
(3)
P 		102.7
(-1.5)
P 		106.3
(-1.4)
P 		72.6
(-3)
P 		89.8
(-2.2)
P 		124
B 298.3
(3)
P 		184.6
(-0.3)
P 		156.6
(-1.1)
P 		110.6
(-2.5)
P 		91.9
(-3)
P 		149.4
(-1.3)
P 		206
C 335.3
(3)
P 		178.7
(-0.6)
P 		148.2
(-1.3)
P 		74.8
(-3)
P 		115.2
(-2.1)
P 		82.3
(-2.8)
P 		261
avr 270.6
(3) 		186.5
(0.2) 		135.8
(-1.6) 		97.2
(-2.9) 		93.2
(-3) 		107.2
(-2.5) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177839_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14643
Sequence Type Exemplar sequence
Representative Public ID Y69H2.4 NCBI
Target Description Y69H2.4 /REP_DB=WormBase Gene ID /WP=CE22822 /TR=Q9U1U6 /GB=CAB63401.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075243(11), NM_075241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075243 NCBI Caenorhabditis elegans Y69H2.3b (Y69H2.3) mRNA, complete cds. 11/11 None
NM_075241 NCBI Caenorhabditis elegans Y69H2.3c (Y69H2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000002606 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18658765:18667381:-1 11/11 None
Y69H2.3b ENSEMBL cdna:known chromosome:CEL140:V:18658681:18666670:-1 gene:Y69H2.3 11/11 None
Y69H2.3c ENSEMBL cdna:known chromosome:CEL140:V:18658765:18666670:-1 gene:Y69H2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029109 1/11 Cross Hyb Matching Probes None
SNAP00000002597 7/11 Cross Hyb Matching Probes None
SNAP00000002599 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002611 1/11 Cross Hyb Matching Probes None
Y69H2.10b 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180221 4 2 NM_075241 177839_s_at (11)
NM_075242 182787_s_at (11)
NM_075243 177839_s_at (11)
NM_075244 182787_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18658764-18661971(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y69H2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54473 Hypothetical protein Y69H2.3b [Caenorhabditis elegans] ref|NP_507644.2| Y69H2.3b [Caenorhabditis elegans] 0.0
blast CAD56616 Hypothetical protein Y69H2.3c [Caenorhabditis elegans] ref|NP_507642.2| Y69H2.3c [Caenorhabditis elegans] 0.0
blast CAE73283 Hypothetical protein CBG20701 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.6E-20
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 8.4E-11
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 3.3E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.9E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.1E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.0E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.7E-12
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.9E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.1E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.0E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.7E-12
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.6E-20
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 8.4E-11
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 3.3E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.9E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.1E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.0E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.7E-12
Sequence
Target Sequence 
>C. ELEGANS:177839_S_AT
cgacggcgagtgctacaagcccaaggattgcccaccagagtgcggtcaaaacgaggagta
ccggtgtgaaaagtgtgcgggtacctgtaaaaacccggagccaaactgcccgggaccaaa
gaacaagagctgtaagagggcttgcatttgtgcgccgggctttgtgaagaagaatggaaa
atgtgtgacgctggctagctgcccggatcatgaccacacgaacatcacctgtctgggaac
ccaagagtacacggattgcatgccaaagtgtcaacagttgtgctctggggctcaacagtg
cgagactggaatggagatagccatgtgcacgccgggatgtgtttgtaggccgaactataa
gctggacagcaacggagactgtgttcacaaccggcattgttttaagaccaccgaatgccc
ggacaacgaggaatggtccaagtgcctgagcaacgataaccaatgcgacttggcttcgat
ttccatgatcgccaacaaggatcagtgcttctcgggatgcgtctgcgcggatggcttcgc
gaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGGCGAGTGCTACAAGCCCAAG 673 249 792 Antisense
ATTGCCCACCAGAGTGCGGTCAAAA 152 7 818 Antisense
CATTTGTGCGCCGGGCTTTGTGAAG 254 213 936 Antisense
AAATGTGTGACGCTGGCTAGCTGCC 133 119 970 Antisense
GCTCTGGGGCTCAACAGTGCGAGAC 515 297 1073 Antisense
CCATGTGCACGCCGGGATGTGTTTG 110 271 1112 Antisense
GAGACTGTGTTCACAACCGGCATTG 44 395 1166 Antisense
GAATGGTCCAAGTGCCTGAGCAACG 470 331 1222 Antisense
TGCGACTTGGCTTCGATTTCCATGA 11 585 1255 Antisense
ACAAGGATCAGTGCTTCTCGGGATG 652 111 1286 Antisense
CGTCTGCGCGGATGGCTTCGCGAGA 656 245 1311 Antisense
Sequence Source Affymetrix Proprietary Database