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[177838_at]

Description F37H8.5 /REP_DB=WormBase Gene ID /WP=CE15997 /TR=O17861 /GB=CAB04345.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 10      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 23      6grp_total > 32      4grp_total > 51      6grp_highest_sub > De      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1939
1 2 3 4 range
A 1678.8
(-0.2)
P 		2666.3
(3)
P 		2233.3
(1.6)
P 		818.8
(-3)
P 		1848
B 1792.6
(0.6)
P 		2467.9
(3)
P 		2436.9
(2.9)
P 		787.5
(-3)
P 		1680
C 1796.1
(0.6)
P 		2515.7
(3)
P 		2199.1
(1.9)
P 		727.5
(-3)
P 		1788
avr 1755.8
(0.3) 		2550
(3) 		2289.8
(2.1) 		777.9
(-3) 		1772

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2505
1 2 3 4 5 6 range
A 3101.6
(3)
P 		2400.3
(1)
P 		2936.6
(2.5)
P 		2647.2
(1.7)
P 		1765.6
(-0.7)
P 		954.6
(-3)
P 		2147
B 2714.6
(3)
P 		2297.5
(1.7)
P 		2623.4
(2.7)
P 		2617.4
(2.7)
P 		1643.9
(-0.3)
P 		738.6
(-3)
P 		1976
C 2951.6
(2.3)
P 		2285.2
(0.7)
P 		3243.2
(3)
P 		2568.1
(1.3)
P 		1796.2
(-0.5)
P 		793.1
(-3)
P 		2450
avr 2922.6
(3) 		2327.7
(1.3) 		2934.4
(3) 		2610.9
(2.1) 		1735.2
(-0.4) 		828.8
(-3) 		2106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 647
1 2 3 4 range
A 611.2
(3)
P 		578.8
(2.6)
P 		583.8
(2.7)
P 		119.9
(-3)
P 		491
B 571.6
(2.5)
P 		609.5
(3)
P 		564.7
(2.4)
P 		167.8
(-3)
P 		442
C 594.6
(1.4)
P 		723.3
(2.6)
P 		766.5
(3)
P 		122.7
(-3)
P 		644
avr 592.5
(2.5) 		637.2
(3) 		638.3
(3) 		136.8
(-3) 		502

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 862
1 2 3 4 5 6 range
A 571.8
(0.3)
P 		853.7
(3)
P 		639.5
(0.9)
P 		671.4
(1.2)
P 		532.8
(-0.1)
P 		232.4
(-3)
P 		621
B 944.5
(3)
P 		764.8
(1.4)
P 		637
(0.2)
P 		693.3
(0.7)
P 		667.9
(0.5)
P 		275.4
(-3)
P 		669
C 1094
(3)
P 		697.3
(0.1)
P 		825.4
(1.1)
P 		516.5
(-1.2)
P 		581.2
(-0.7)
P 		265.5
(-3)
P 		829
avr 870.1
(3) 		771.9
(2) 		700.6
(1.3) 		627.1
(0.6) 		594
(0.3) 		257.8
(-3) 		612
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3571
Sequence Type Exemplar sequence
Representative Public ID F37H8.5 NCBI
Target Description F37H8.5 /REP_DB=WormBase Gene ID /WP=CE15997 /TR=O17861 /GB=CAB04345.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063996 NCBI Caenorhabditis elegans F37H8.5 (F37H8.5) mRNA, complete cds. 11/11 None
SNAP00000006628 ENSEMBL cdna:SNAP chromosome:CEL140:II:11188220:11189308:1 11/11 None
GENEFINDER00000006632 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11188163:11189308:1 11/11 None
F37H8.5 ENSEMBL cdna:known chromosome:CEL140:II:11188118:11189347:1 gene:F37H8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11188159-11189305(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37H8.5
Entrez Gene 3564874 Entrez gene
SwissProt O17861 EMBL-EBI
WormBase CE15997 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17890_AT gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein at
ATH1-121501:254786_AT gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein at
CANINE:1603722_S_AT similar to Gamma-interferon inducible lysosomal thiol reductase precursor (Gamma-interferon-inducible protein IP-30) cfa
CANINE:1592032_AT similar to Gamma-interferon inducible lysosomal thiol reductase precursor (Gamma-interferon-inducible protein IP-30) cfa
CANINE:1583395_AT similar to Gamma-interferon inducible lysosomal thiol reductase precursor (Gamma-interferon-inducible protein IP-30) cfa
CANINE_2:CFA.12552.1.A1_AT similar to Gamma-interferon inducible lysosomal thiol reductase precursor (Gamma-interferon-inducible protein IP-30) cfa
CANINE_2:CFAAFFX.23006.1.S1_S_AT similar to Gamma-interferon inducible lysosomal thiol reductase precursor (Gamma-interferon-inducible protein IP-30) cfa
CHICKEN:GGA.11539.1.S1_AT similar to Gamma-interferon inducible lysosomal thiol reductase precursor (Gamma-interferon-inducible protein IP-30) gga
HG-U95AV2:925_AT interferon, gamma-inducible protein 30 hs
HC-G110:925_AT interferon, gamma-inducible protein 30 hs
HUGENEFL:J03909_AT interferon, gamma-inducible protein 30 hs
HG-U133A:201422_AT interferon, gamma-inducible protein 30 hs
HG-U133_PLUS_2:201422_AT interferon, gamma-inducible protein 30 hs
HG-FOCUS:201422_AT interferon, gamma-inducible protein 30 hs
HG-U133A_2:201422_AT interferon, gamma-inducible protein 30 hs
U133_X3P:G5453695_3P_AT interferon, gamma-inducible protein 30 hs
HG-U95AV2:39728_AT interferon, gamma-inducible protein 30 hs
MU11KSUBB:MSA.4530.0_S_AT interferon gamma inducible protein 30 mm
MU11KSUBB:W11156_AT interferon gamma inducible protein 30 mm
MU11KSUBB:W11156_G_AT interferon gamma inducible protein 30 mm
MG-U74AV2:97444_AT interferon gamma inducible protein 30 mm
MG-U74BV2:164423_AT interferon gamma inducible protein 30 mm
MOE430A:1422476_AT interferon gamma inducible protein 30 mm
MOUSE430A_2:1422476_AT interferon gamma inducible protein 30 mm
MOUSE430_2:1422476_AT interferon gamma inducible protein 30 mm
MOE430B:1453984_AT interferon gamma inducible protein 30 mm
MOUSE430_2:1453984_AT interferon gamma inducible protein 30 mm
MU19KSUBA:TC22922_AT Interferon gamma inducible protein 30 (Ifi30), mRNA mm
RG-U34B:RC_AA852018_AT interferon gamma inducible protein 30 (predicted) rn
RAE230A:1372070_AT interferon gamma inducible protein 30 (predicted) rn
RAT230_2:1372070_AT interferon gamma inducible protein 30 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB04345 Hypothetical protein F37H8.5 [Caenorhabditis elegans] ref|NP_496397.1| F37H8.5 [Caenorhabditis elegans] 1.0E-161
blast CAB04345 Hypothetical protein F37H8.5 [Caenorhabditis elegans] ref|NP_496397.1| F37H8.5 [Caenorhabditis elegans] 1.0E-149
blast CAE59553 Hypothetical protein CBG02950 [Caenorhabditis briggsae] 1.0E-133
blast CAE59553 Hypothetical protein CBG02950 [Caenorhabditis briggsae] 1.0E-131
blast AAK71376 Prion-like-(q/n-rich)-domain-bearing protein protein 48 [Caenorhabditis elegans] ref|NP_494711.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-48) [Caenorhabditis elegans] 3.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 1.0E-55
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 1.0E-55
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496397.1 1 21-43
F37H8.5 1 21-43
GENEFINDER00000006632 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:177838_AT
tcactgttctgatcgaagctctctgcccagactgccaaaacttcctcaccaagcaactat
acccaatcgtcttcaaaaactttgccaactatgtcaacattgaactagtcccattcggaa
atgcaaaggtcctggaagatggaacaatcaagtgccagcacggagaggaagaatgctcga
ttaacaagttcgaaggatgcttcatcgactccatgcaagaccagagcccacttccaactc
tttcttgtattgaagagagtcttcagaagaaggttgaatttgcagatgctgttcaacaat
gtttcgaaaaacttcaaattggaggggatattcagagattgacacaatcctgtttggtgt
caaagctcggagctgatcttcaaaataaagccgccgcggccacagccaatgtttggcctg
agcagcacaagttcgtcccatgggtgatcatcaatggggtctctctcaccagcttccaag
gattccaaaaccaacttccaaccctcctctgcgaatggtattctggagacaaggccattc
catactgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTGTTCTGATCGAAGCTCTCTG 606 623 245 Antisense
AAACTTCCTCACCAAGCAACTATAC 537 127 282 Antisense
CAACTATACCCAATCGTCTTCAAAA 344 187 298 Antisense
GAAGGATGCTTCATCGACTCCATGC 76 335 436 Antisense
CCACTTCCAACTCTTTCTTGTATTG 495 273 472 Antisense
GCGGCCACAGCCAATGTTTGGCCTG 80 295 640 Antisense
TGGCCTGAGCAGCACAAGTTCGTCC 547 543 658 Antisense
GGTGATCATCAATGGGGTCTCTCTC 263 501 687 Antisense
TCTCACCAGCTTCCAAGGATTCCAA 467 613 708 Antisense
AACCCTCCTCTGCGAATGGTATTCT 149 145 744 Antisense
GAGACAAGGCCATTCCATACTGTGA 464 393 770 Antisense
Sequence Source Affymetrix Proprietary Database