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[177836_s_at]

Description R10E9.2 /REP_DB=WormBase Gene ID /WP=CE01051 /TR=Q21910 /GB=CAA84666.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 4.7
(-3)
A 		54
(0.7)
A 		40.6
(-0.3)
A 		84
(3)
A 		79
B 19.7
(-2.3)
A 		13.8
(-3)
A 		26.1
(-1.6)
A 		65
(3)
A 		51
C 46.5
(-1.2)
A 		35.7
(-2.1)
A 		24.5
(-3)
A 		99.3
(3)
A 		75
avr 23.6
(-3) 		34.5
(-1.9) 		30.4
(-2.3) 		82.8
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 573
1 2 3 4 5 6 range
A 7.1
(-3)
A 		13.6
(-2.9)
A 		52.1
(-2.5)
A 		107.3
(-1.9)
P 		366.5
(0.8)
P 		571.5
(3)
P 		564
B 7.2
(-3)
A 		15
(-2.9)
A 		37
(-2.7)
A 		40.2
(-2.6)
A 		402.8
(1.3)
P 		563.4
(3)
P 		556
C 23.5
(-3)
A 		50.1
(-2.7)
A 		43.7
(-2.8)
A 		98.6
(-2.2)
A 		412.4
(1.2)
P 		580
(3)
P 		557
avr 12.6
(-3) 		26.2
(-2.9) 		44.3
(-2.7) 		82
(-2.3) 		393.9
(1.1) 		571.6
(3) 		559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.7
(-3)
A 		11.7
(2.7)
A 		10.6
(2)
A 		12.3
(3)
A 		11
B 6.3
(-1.3)
A 		3.4
(-3)
A 		6
(-1.5)
A 		13.9
(3)
A 		11
C 15.4
(2)
A 		10.3
(-1.7)
A 		8.5
(-3)
A 		16.8
(3)
A 		8
avr 7.8
(-3) 		8.5
(-2.4) 		8.4
(-2.4) 		14.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 1.3
(-3)
A 		4.8
(-2.8)
A 		11.3
(-2.6)
A 		27.2
(-1.9)
P 		110.6
(1.8)
P 		139.1
(3)
P 		138
B 2.5
(-3)
A 		5
(-2.9)
A 		9
(-2.8)
A 		10.6
(-2.8)
A 		163.7
(1.7)
P 		210.1
(3)
P 		208
C 8.7
(-3)
A 		15.3
(-2.8)
A 		11.1
(-2.9)
A 		19.8
(-2.6)
A 		133.5
(1)
P 		194.2
(3)
P 		186
avr 4.2
(-3) 		8.4
(-2.9) 		10.5
(-2.8) 		19.2
(-2.5) 		135.9
(1.5) 		181.1
(3) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177836_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6146
Sequence Type Exemplar sequence
Representative Public ID R10E9.2 NCBI
Target Description R10E9.2 /REP_DB=WormBase Gene ID /WP=CE01051 /TR=Q21910 /GB=CAA84666.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065397 NCBI Caenorhabditis elegans R10E9.2 (R10E9.2) mRNA, complete cds. 11/11 None
SNAP00000008642 ENSEMBL cdna:SNAP chromosome:CEL140:III:3962768:3964025:-1 11/11 None
GENEFINDER00000008651 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3962768:3965494:-1 11/11 None
R10E9.2 ENSEMBL cdna:known chromosome:CEL140:III:3962767:3964073:-1 gene:R10E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3962767-3964025(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E9.2
Entrez Gene 175513 Entrez gene
SwissProt Q21910 EMBL-EBI
WormBase CE01051 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84666 Hypothetical protein R10E9.2 [Caenorhabditis elegans] ref|NP_497798.1| R10E9.2 [Caenorhabditis elegans] 1.0E-122
blast CAA84666 Hypothetical protein R10E9.2 [Caenorhabditis elegans] ref|NP_497798.1| R10E9.2 [Caenorhabditis elegans] 1.0E-120
blast CAA83628 Hypothetical protein R07E5.15 [Caenorhabditis elegans] ref|NP_497889.1| R07E5.15 [Caenorhabditis elegans] 5.0E-93
blast CAE45044 Hypothetical protein F17C8.7 [Caenorhabditis elegans] ref|NP_001022543.1| F17C8.7 [Caenorhabditis elegans] 1.0E-91
Sequence
Target Sequence 
>C. ELEGANS:177836_S_AT
tctcatcgtgtcatccagtttcgtgtcaactcgtcgaagctttcccattgggataagttg
aacatgtcgatcaagggttatgtgatgccgatttacgcaaagaacctcaagcagtttatc
gatcagaagtctacagcaggtactcaggatcaggaggctttctcgcttgcagtcaagttt
acggatcagtactcggctccgcaggttctcatcaacttgccaggaagtgccacgtgtatc
gagtcgatggatcaccctgttggaattgaagagctggacacgatcactgcagttaacatt
gagaaagacgccctgaccgctgctccaattggaaatctgatgggatttgtcgaggaatac
aaacgtcgcaacactaacaaaggtggatgctggttgtccaactacatttgcggtggcgaa
gaggagcaaaaagagaagaaatctattagaggagcatcccgtcgttcaagtcgttcttcg
aagaaaagtgcaaagtctgctggatcgtcgagttgccgttcacagtctcgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCATCGTGTCATCCAGTTTCGTG 245 613 187 Antisense
TCGTGTCAACTCGTCGAAGCTTTCC 369 605 207 Antisense
CAGGATCAGGAGGCTTTCTCGCTTG 299 209 331 Antisense
TTTACGGATCAGTACTCGGCTCCGC 46 663 364 Antisense
GTATCGAGTCGATGGATCACCCTGT 313 455 422 Antisense
AGAGCTGGACACGATCACTGCAGTT 255 69 456 Antisense
GTTGTCCAACTACATTTGCGGTGGC 667 435 579 Antisense
ATTAGAGGAGCATCCCGTCGTTCAA 46 13 631 Antisense
CCGTCGTTCAAGTCGTTCTTCGAAG 371 263 645 Antisense
GCAAAGTCTGCTGGATCGTCGAGTT 152 319 676 Antisense
TCGAGTTGCCGTTCACAGTCTCGTA 590 597 694 Antisense
Sequence Source Affymetrix Proprietary Database