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[177835_at]

Description F37A8.5 /REP_DB=WormBase Gene ID /WP=CE23704 /TR=Q9U3G6 /GB=CAB54236.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 67.8
(-0.1)
P 		29.5
(-2.6)
A 		23.2
(-3)
A 		115.8
(3)
P 		93
B 105.8
(1.9)
P 		76.7
(-1.2)
P 		60.4
(-3)
M 		116.1
(3)
P 		56
C 69.4
(0.4)
P 		97.2
(2.5)
P 		24.6
(-3)
A 		104.1
(3)
P 		80
avr 81
(0.5) 		67.8
(-0.5) 		36.1
(-3) 		112
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 89.5
(3)
A 		44.1
(-1)
P 		21.7
(-3)
A 		61.9
(0.6)
A 		64.3
(0.8)
P 		22.8
(-2.9)
A 		68
B 60.2
(0.3)
P 		53.4
(-1.4)
P 		70.7
(3)
P 		47.3
(-3)
A 		57.9
(-0.3)
A 		48.7
(-2.6)
P 		23
C 59.8
(3)
P 		53.2
(1.3)
A 		41.4
(-1.7)
A 		42.4
(-1.5)
A 		36.4
(-3)
A 		58
(2.5)
P 		23
avr 69.8
(3) 		50.2
(-1.4) 		44.6
(-2.7) 		50.5
(-1.4) 		52.9
(-0.8) 		43.2
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 24.7
(3)
P 		6.4
(-2.9)
A 		6.1
(-3)
A 		16.9
(0.5)
P 		19
B 33.7
(3)
P 		18.9
(-1.5)
P 		14
(-3)
M 		24.8
(0.3)
P 		20
C 23
(1.5)
P 		27.9
(3)
P 		8.6
(-3)
A 		17.5
(-0.2)
P 		19
avr 27.1
(3) 		17.7
(-0.2) 		9.6
(-3) 		19.7
(0.5) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 16.5
(1.8)
A 		15.7
(1.5)
P 		4.7
(-3)
A 		15.7
(1.5)
A 		19.4
(3)
P 		5.6
(-2.6)
A 		15
B 21
(1.6)
P 		17.8
(-0.1)
P 		17.2
(-0.4)
P 		12.5
(-3)
A 		23.5
(3)
A 		18.2
(0.1)
P 		11
C 22.2
(3)
P 		16.2
(0.4)
A 		10.5
(-2.1)
A 		8.5
(-3)
A 		11.8
(-1.6)
A 		19.4
(1.8)
P 		14
avr 19.9
(3) 		16.6
(0.8) 		10.8
(-3) 		12.2
(-2.1) 		18.2
(1.9) 		14.4
(-0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8058
Sequence Type Exemplar sequence
Representative Public ID F37A8.5 NCBI
Target Description F37A8.5 /REP_DB=WormBase Gene ID /WP=CE23704 /TR=Q9U3G6 /GB=CAB54236.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065395 NCBI Caenorhabditis elegans F37A8.5 (F37A8.5) mRNA, complete cds. 11/11 None
SNAP00000009910 ENSEMBL cdna:SNAP chromosome:CEL140:III:3956611:3957450:1 11/11 None
GENEFINDER00000009912 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3956611:3957733:1 11/11 None
F37A8.5 ENSEMBL cdna:known chromosome:CEL140:III:3956599:3958066:1 gene:F37A8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3956598-3957450(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37A8.5
Entrez Gene 175512 Entrez gene
SwissProt Q9U3G6 EMBL-EBI
WormBase CE23704 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248187_AT yippee family protein at
CANINE_2:CFAAFFX.967.1.S1_AT similar to yippee-like 2 cfa
DROSOPHILA_2:1627228_AT dm
DROSGENOME1:152303_AT dm
CHICKEN:GGA.16859.1.S1_AT yippee-like 2 (Drosophila) gga
CHICKEN:GGA.17034.1.S1_S_AT yippee-like 2 (Drosophila) gga
CHICKEN:GGAAFFX.13080.1.S1_AT yippee-like 2 (Drosophila) gga
CHICKEN:GGAAFFX.20565.1.S1_S_AT yippee-like 2 (Drosophila) gga
CHICKEN:GGAAFFX.21537.1.S1_S_AT yippee-like 2 (Drosophila) gga
HG-U133_PLUS_2:229060_AT yippee-like 2 (Drosophila) hs
HG-U133B:229060_AT yippee-like 2 (Drosophila) hs
HG-U95C:50225_S_AT yippee-like 2 (Drosophila) hs
HU35KSUBB:RC_R26904_F_AT yippee-like 2 (Drosophila) hs
HU35KSUBD:RC_D60689_AT yippee-like 2 (Drosophila) hs
U133_X3P:HS2.368672.1.S1_3P_S_AT yippee-like 2 (Drosophila) hs
U133_X3P:HS.88845.0.A1_3P_AT yippee-like 2 (Drosophila) hs
U133_X3P:HS.24133.0.A1_3P_AT yippee-like 2 (Drosophila) hs
HG-U133_PLUS_2:1556420_S_AT yippee-like 2 (Drosophila) hs
HG-U133_PLUS_2:227020_AT yippee-like 2 (Drosophila) hs
HG-U133B:227020_AT yippee-like 2 (Drosophila) hs
HG-U95B:50359_AT yippee-like 2 (Drosophila) hs
HG-U95D:77492_AT yippee-like 2 (Drosophila) hs
U133_X3P:HS2.269554.1.A1_3P_AT Yippee-like 2 (Drosophila) hs
HG-U133_PLUS_2:1556679_AT Yippee-like 2 (Drosophila) hs
HG-U133_PLUS_2:229051_AT Yippee-like 2 (Drosophila) hs
HG-U133B:229051_AT Yippee-like 2 (Drosophila) hs
HG-U133_PLUS_2:244200_AT Yippee-like 2 (Drosophila) hs
HG-U133B:244200_AT Yippee-like 2 (Drosophila) hs
HG-U95B:58663_AT Yippee-like 2 (Drosophila) hs
HG-U95B:58668_G_AT Yippee-like 2 (Drosophila) hs
HG-U95E:77584_R_AT Yippee-like 2 (Drosophila) hs
HU35KSUBA:AA287724_AT Yippee-like 2 (Drosophila) hs
HU35KSUBC:RC_AA287725_AT Yippee-like 2 (Drosophila) hs
U133_X3P:HS.88845.0.S1_3P_AT Yippee-like 2 (Drosophila) hs
MG-U74BV2:106906_AT yippee-like 2 (Drosophila) mm
MOE430B:1453414_AT yippee-like 2 (Drosophila) mm
MOUSE430_2:1453414_AT yippee-like 2 (Drosophila) mm
MOE430B:1440560_AT Ypel2 mRNA for yippee-like 2 mm
MOUSE430_2:1440560_AT Ypel2 mRNA for yippee-like 2 mm
MOE430B:1438331_AT Ypel2 mRNA for yippee-like 2 mm
MOUSE430_2:1438331_AT Ypel2 mRNA for yippee-like 2 mm
MOE430B:1443709_AT Ypel2 mRNA for yippee-like 2 mm
MOUSE430_2:1443709_AT Ypel2 mRNA for yippee-like 2 mm
MU19KSUBA:TC17303_AT Ypel2 mRNA for yippee-like 2 mm
Protein Similarities
Method ID Description E-Value
blast CAB54236 Hypothetical protein F37A8.5 [Caenorhabditis elegans] ref|NP_497796.1| F37A8.5 [Caenorhabditis elegans] sp|Q9U3G6|YPL1_CAEEL Yippee-like protein F37A8.5 2.0E-78
blast CAB54236 Hypothetical protein F37A8.5 [Caenorhabditis elegans] ref|NP_497796.1| F37A8.5 [Caenorhabditis elegans] sp|Q9U3G6|YPL1_CAEEL Yippee-like protein F37A8.5 1.0E-75
blast CAB54236 Hypothetical protein F37A8.5 [Caenorhabditis elegans] ref|NP_497796.1| F37A8.5 [Caenorhabditis elegans] sp|Q9U3G6|YPL1_CAEEL Yippee-like protein F37A8.5 1.0E-67
blast XP_690346 PREDICTED: similar to Yippee-like protein 1 (DiGeorge syndrome-related protein FKSG3) [Danio rerio] 5.0E-55
blast XP_690346 PREDICTED: similar to Yippee-like protein 1 (DiGeorge syndrome-related protein FKSG3) [Danio rerio] 6.0E-55
blast NP_001005341 yippee-like 2 [Mus musculus] ref|NP_001005404.1| yippee-like 2 [Homo sapiens] ref|XP_852552.1| PREDICTED: similar to yippee-like 2 [Canis familiaris] emb|CAI24350.1| ortholog of human yippee-like 2 (Drosophila) YPEL2 [Mus musculus] emb|CAG32636.1| hypothetical protein [Gallus gallus] emb|CAH90118.1| hypothetical protein [Pongo pygmaeus] ref|NP_001007848.1| yippee-like 2 [Gallus gallus] gb|AAH97746.1| Unknown (protein for MGC:115434) [Xenopus laevis] gb|AAL09354.1| DiGeorge syndrome-related protein FKSG4 [Homo sapiens] dbj|BAD51382.1| yippee-like 2 [Mus musculus] dbj|BAD51387.1| yippee-like 2 [Cercopithecus aethiops] dbj|BAD51377.1| yippee-like 2 [Homo sapiens] sp|Q65Z58|YPEL2_CERAE Yippee-like protein 2 sp|Q65Z95|YPEL2_MOUSE Yippee-like protein 2 sp|Q96QA6|YPEL2_HUMAN Yippee-like protein 2 sp|Q5RDN9|YPEL2_PONPY Yippee-like protein 9.0E-55
blast NP_001005341 yippee-like 2 [Mus musculus] ref|NP_001005404.1| yippee-like 2 [Homo sapiens] ref|XP_852552.1| PREDICTED: similar to yippee-like 2 [Canis familiaris] emb|CAI24350.1| ortholog of human yippee-like 2 (Drosophila) YPEL2 [Mus musculus] emb|CAG32636.1| hypothetical protein [Gallus gallus] emb|CAH90118.1| hypothetical protein [Pongo pygmaeus] ref|NP_001007848.1| yippee-like 2 [Gallus gallus] gb|AAH97746.1| Unknown (protein for MGC:115434) [Xenopus laevis] gb|AAL09354.1| DiGeorge syndrome-related protein FKSG4 [Homo sapiens] dbj|BAD51382.1| yippee-like 2 [Mus musculus] dbj|BAD51387.1| yippee-like 2 [Cercopithecus aethiops] dbj|BAD51377.1| yippee-like 2 [Homo sapiens] sp|Q65Z58|YPEL2_CERAE Yippee-like protein 2 sp|Q65Z95|YPEL2_MOUSE Yippee-like protein 2 sp|Q96QA6|YPEL2_HUMAN Yippee-like protein 2 sp|Q5RDN9|YPEL2_PONPY Yippee-like protein 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR004910 EMBL-EBI Yippee-like protein 3.0E-78
Pfam IPR004910 EMBL-EBI Yippee-like protein 3.0E-78
Pfam IPR004910 EMBL-EBI Yippee-like protein 2.7E-76
Sequence
Target Sequence 
>C. ELEGANS:177835_AT
aattcaagcaagcacaacacgccgaaaaagcagaaaacgtttcagcactacctccctgcc
ggcgaccgctgctacagttgtattcactgcagagccaacctcgccgctcacgccgagctc
atttcgaagagttttcaggggagtcaaggaaaagcgtacctgttcaatgcagttgtcaat
gtaggatgtgggccagctgaggagcgtgtactattgaccggccttcacgcggttgccgat
atttattgcgagatctgcaaaacgacgttgggatggaaatatgagcacgcattcgaatcg
agtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAAGCAAGCACAACACGCCGA 531 175 40 Antisense
CAGAAAACGTTTCAGCACTACCTCC 305 205 70 Antisense
CGACCGCTGCTACAGTTGTATTCAC 44 251 102 Antisense
TTGTATTCACTGCAGAGCCAACCTC 458 705 117 Antisense
CTCACGCCGAGCTCATTTCGAAGAG 320 229 146 Antisense
AGCGTACCTGTTCAATGCAGTTGTC 195 79 192 Antisense
AGGATGTGGGCCAGCTGAGGAGCGT 554 55 222 Antisense
AGGAGCGTGTACTATTGACCGGCCT 497 55 239 Antisense
GCGGTTGCCGATATTTATTGCGAGA 497 291 268 Antisense
GCGAGATCTGCAAAACGACGTTGGG 114 291 287 Antisense
ATGAGCACGCATTCGAATCGAGTCA 458 45 320 Antisense
Sequence Source Affymetrix Proprietary Database