[Home] | [Total List]

[177830_at]

Description F43G6.7 /REP_DB=WormBase Gene ID /WP=CE02225 /TR=Q20368 /GB=CAA90396.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 7.9
(-3)
A 		23
(1.5)
A 		28.2
(3)
A 		13.3
(-1.4)
A 		20
B 10.7
(-3)
A 		14.3
(-2.1)
A 		15.5
(-1.8)
A 		33.9
(3)
A 		23
C 15.2
(1.1)
A 		14.7
(0.3)
A 		16.4
(3)
A 		12.6
(-3)
A 		4
avr 11.3
(-3) 		17.3
(1.1) 		20
(3) 		19.9
(2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 10.6
(-2.9)
A 		36.9
(-1.6)
A 		7.7
(-3)
A 		9.3
(-2.9)
A 		16.4
(-2.6)
A 		137.4
(3)
A 		130
B 9
(-3)
A 		8.5
(-3)
A 		47.6
(-1.1)
A 		8.4
(-3)
A 		50.8
(-1)
A 		133.5
(3)
A 		125
C 13.1
(-2.6)
A 		35.3
(-1)
A 		8.3
(-3)
A 		20.3
(-2.1)
A 		49.4
(0.1)
A 		88.4
(3)
A 		80
avr 10.9
(-3) 		26.9
(-2.1) 		21.2
(-2.4) 		12.7
(-2.9) 		38.9
(-1.5) 		119.8
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.9
(-1.9)
A 		5
(0.4)
A 		7.4
(3)
A 		1.9
(-3)
A 		6
B 3.4
(-3)
A 		3.5
(-2.8)
A 		3.6
(-2.7)
A 		7.2
(3)
A 		4
C 5
(1.8)
A 		4.2
(0.5)
A 		5.7
(3)
A 		2.1
(-3)
A 		4
avr 3.8
(-2.7) 		4.2
(-1.4) 		5.6
(3) 		3.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 2
(-2.9)
A 		13.1
(-0.8)
A 		1.7
(-3)
A 		2.4
(-2.9)
A 		4.9
(-2.4)
A 		33.5
(3)
A 		32
B 3.1
(-2.9)
A 		2.8
(-2.9)
A 		11.6
(-1.8)
A 		2.2
(-3)
A 		20.7
(-0.7)
A 		49.8
(3)
A 		48
C 4.8
(-2.4)
A 		10.8
(-1.1)
A 		2.1
(-3)
A 		4.1
(-2.6)
A 		16
(0)
A 		29.6
(3)
A 		28
avr 3.3
(-2.9) 		8.9
(-2) 		5.1
(-2.6) 		2.9
(-3) 		13.9
(-1.1) 		37.6
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2652
Sequence Type Exemplar sequence
Representative Public ID F43G6.7 NCBI
Target Description F43G6.7 /REP_DB=WormBase Gene ID /WP=CE02225 /TR=Q20368 /GB=CAA90396.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064121 NCBI Caenorhabditis elegans F43G6.7 (F43G6.7) mRNA, complete cds. 11/11 None
SNAP00000023958 ENSEMBL cdna:SNAP chromosome:CEL140:II:11810701:11811447:1 11/11 None
GENEFINDER00000023970 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11810701:11811447:1 11/11 None
F43G6.7 ENSEMBL cdna:known chromosome:CEL140:II:11810701:11811560:1 gene:F43G6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11810697-11811444(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43G6.7
Entrez Gene 174814 Entrez gene
SwissProt Q20368 EMBL-EBI
WormBase CE02225 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90396 Hypothetical protein F43G6.7 [Caenorhabditis elegans] ref|NP_496522.1| F43G6.7 [Caenorhabditis elegans] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:177830_AT
tgcttttcccgcggaagcagcgagatcggaccgggaccatggccatcactagaatcccag
ccaccagccccaggggatcagccagttcaaggacctgctgaccccgccatgctcccgcca
cctcaccagcaaccaggtcaagcaccagatccaccagcagcggctcaagatgaacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTTTTCCCGCGGAAGCAGCGAGA 480 579 22 Antisense
AGCAGCGAGATCGGACCGGGACCAT 369 71 37 Antisense
GGGACCATGGCCATCACTAGAATCC 275 495 54 Antisense
TGGCCATCACTAGAATCCCAGCCAC 578 543 61 Antisense
CCCAGGGGATCAGCCAGTTCAAGGA 42 259 90 Antisense
GGATCAGCCAGTTCAAGGACCTGCT 567 511 96 Antisense
CAGCCAGTTCAAGGACCTGCTGACC 291 203 100 Antisense
TCACCAGCAACCAGGTCAAGCACCA 112 625 144 Antisense
CAACCAGGTCAAGCACCAGATCCAC 656 185 151 Antisense
ATCCACCAGCAGCGGCTCAAGATGA 486 39 170 Antisense
CCAGCAGCGGCTCAAGATGAACTTG 179 273 175 Antisense
Sequence Source Affymetrix Proprietary Database