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[177829_at]

Description F14E5.5 /REP_DB=WormBase Gene ID /WP=CE03208 /TR=Q19462 /GB=CAA91408.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 48      6grp_total > 66      4grp_total > 17      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7553
1 2 3 4 range
A 2248.2
(-3)
P 		4309.8
(-1.3)
P 		3430
(-2)
P 		9701.8
(3)
P 		7454
B 2286.9
(-3)
P 		3890.5
(-1.6)
P 		3550
(-1.9)
P 		9115.6
(3)
P 		6829
C 2148.7
(-3)
P 		3803
(-1.6)
P 		3522.8
(-1.8)
P 		9094.1
(3)
P 		6945
avr 2227.9
(-3) 		4001.1
(-1.5) 		3500.9
(-1.9) 		9303.8
(3) 		7076

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7541
1 2 3 4 5 6 range
A 2499.8
(-2.7)
P 		3018.9
(-2.2)
P 		3931.9
(-1.5)
P 		4850.2
(-0.8)
P 		2064.3
(-3)
P 		9605.7
(3)
P 		7541
B 2509.9
(-2.8)
P 		3036.2
(-2.2)
P 		3685.4
(-1.5)
P 		3320.8
(-1.9)
P 		2286.6
(-3)
P 		7924.6
(3)
P 		5638
C 3007.7
(-2.3)
P 		2952.4
(-2.4)
P 		4422.6
(-0.7)
P 		4115
(-1.1)
P 		2380.8
(-3)
P 		7761.9
(3)
P 		5381
avr 2672.5
(-2.6) 		3002.5
(-2.3) 		4013.3
(-1.3) 		4095.3
(-1.2) 		2243.9
(-3) 		8430.7
(3) 		6187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1231
1 2 3 4 range
A 818.6
(-3)
P 		935.5
(-1.8)
P 		896.7
(-2.2)
P 		1420.1
(3)
P 		602
B 729.3
(-3)
P 		960.9
(-1.9)
P 		822.6
(-2.5)
P 		1942.5
(3)
P 		1213
C 711.3
(-3)
P 		1093.4
(-0.2)
P 		1227.8
(0.8)
P 		1533.4
(3)
P 		822
avr 753.1
(-3) 		996.6
(-1.3) 		982.4
(-1.4) 		1632
(3) 		879

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2494
1 2 3 4 5 6 range
A 460.8
(-3)
P 		1073.7
(-1)
P 		856.3
(-1.7)
P 		1230.1
(-0.5)
P 		622.9
(-2.5)
P 		2338.7
(3)
P 		1878
B 873.3
(-3)
P 		1010.6
(-2.6)
P 		894.9
(-2.9)
P 		879.6
(-3)
P 		929
(-2.8)
P 		2955
(3)
P 		2082
C 1114.8
(-1.9)
P 		900.9
(-2.6)
P 		1125.6
(-1.8)
P 		827.5
(-2.8)
P 		770.4
(-3)
P 		2598.3
(3)
P 		1828
avr 816.3
(-2.9) 		995.1
(-2.3) 		958.9
(-2.4) 		979.1
(-2.3) 		774.1
(-3) 		2630.7
(3) 		1857
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2637
Sequence Type Exemplar sequence
Representative Public ID F14E5.5 NCBI
Target Description F14E5.5 /REP_DB=WormBase Gene ID /WP=CE03208 /TR=Q19462 /GB=CAA91408.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063376 NCBI Caenorhabditis elegans F14E5.5 (F14E5.5) mRNA, complete cds. 11/11 A 
SNAP00000024808 ENSEMBL cdna:SNAP chromosome:CEL140:II:8441095:8441923:1 9/11 None
GENEFINDER00000024809 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8439119:8441923:1 11/11 None
F14E5.5 ENSEMBL cdna:known chromosome:CEL140:II:8439108:8442051:1 gene:F14E5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8439115-8441920(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14E5.5
Entrez Gene 174345 Entrez gene
SwissProt Q19462 EMBL-EBI
WormBase CE03208 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91408 Hypothetical protein F14E5.5 [Caenorhabditis elegans] ref|NP_495777.1| F14E5.5 [Caenorhabditis elegans] 1.0E-164
blast CAE57648 Hypothetical protein CBG00637 [Caenorhabditis briggsae] 1.0E-150
blast CAA91408 Hypothetical protein F14E5.5 [Caenorhabditis elegans] ref|NP_495777.1| F14E5.5 [Caenorhabditis elegans] 2.0E-89
blast CAE57648 Hypothetical protein CBG00637 [Caenorhabditis briggsae] 7.0E-83
blast AAK31544 Hypothetical protein R07G3.2 [Caenorhabditis elegans] ref|NP_495596.3| R07G3.2 [Caenorhabditis elegans] 3.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 3.8E-109
Pfam IPR002918 EMBL-EBI Lipase, class 2 8.7E-81
Sequence
Target Sequence 
>C. ELEGANS:177829_AT
aagggaactgtattcgcaacaacatatgcaagaggaaagctgatggactcattgcaacac
ggaatgcaatgcgattatgtgttgaaggttcgcactctcattcttgctgttcatgaatac
actcagaaaccagtaaacatcattgcttgctccatgggatctccaattaccagaaaagct
attcttggaggacactgtgttgatagtggagtcaatttgggacgcccaattaatcatcta
attcataattatgtttctgttggtggagcaaatcacggagctattatgtgcgccaagcag
ccatttgtgaatggaatctgtagtttaacacatggtttggattgccgttccaagttctta
caagagatcaactcacagccgttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGGAACTGTATTCGCAACAACAT 557 159 289 Antisense
TGTGTTGAAGGTTCGCACTCTCATT 60 557 366 Antisense
CACTCTCATTCTTGCTGTTCATGAA 267 197 381 Antisense
CAGTAAACATCATTGCTTGCTCCAT 540 207 419 Antisense
TGCTCCATGGGATCTCCAATTACCA 179 581 436 Antisense
TTGGGACGCCCAATTAATCATCTAA 495 707 505 Antisense
ATCACGGAGCTATTATGTGCGCCAA 486 27 560 Antisense
TGTGCGCCAAGCAGCCATTTGTGAA 80 557 575 Antisense
AACACATGGTTTGGATTGCCGTTCC 554 135 615 Antisense
GATTGCCGTTCCAAGTTCTTACAAG 87 429 628 Antisense
CAAGAGATCAACTCACAGCCGTTCC 643 183 649 Antisense
Sequence Source Affymetrix Proprietary Database