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[177828_at]

Description F02H6.4 /REP_DB=WormBase Gene ID /WP=CE17628 /TR=O62131 /GB=CAB05171.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 43      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.7
(-1)
A 		4.3
(3)
A 		3.9
(0.3)
A 		3.4
(-3)
A 		1
B 4.9
(3)
A 		2.2
(-2.6)
A 		2.8
(-1.3)
A 		2
(-3)
A 		3
C 2.8
(-2.5)
A 		14.8
(3)
A 		1.6
(-3)
A 		6
(-1)
A 		13
avr 3.8
(-1.6) 		7.1
(3) 		2.8
(-3) 		3.8
(-1.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.1
(-2.6)
A 		2.7
(-2.7)
A 		5.8
(-1.8)
A 		1.6
(-3)
A 		20.8
(2.4)
A 		22.8
(3)
A 		21
B 3.5
(-2.6)
A 		9.9
(0)
A 		17.2
(3)
A 		14.6
(1.9)
A 		2.6
(-3)
A 		2.9
(-2.9)
A 		15
C 1.8
(-3)
A 		3.4
(-2.3)
A 		2.1
(-2.9)
A 		2.7
(-2.6)
A 		4.9
(-1.7)
A 		15.9
(3)
A 		14
avr 2.8
(-3) 		5.3
(-1.6) 		8.4
(0) 		6.3
(-1.1) 		9.4
(0.6) 		13.9
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.3
(3)
A 		0.9
(0)
A 		1
(0.8)
A 		0.5
(-3)
A 		1
B 1.6
(3)
A 		0.6
(-2)
A 		0.7
(-1.5)
A 		0.4
(-3)
A 		1
C 0.9
(-2.5)
A 		4.3
(3)
A 		0.6
(-3)
A 		1
(-2.4)
A 		4
avr 1.3
(0.2) 		1.9
(3) 		0.8
(-2.1) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-2.8)
A 		0.9
(-2.5)
A 		1.3
(-2.1)
A 		0.4
(-3)
A 		6.3
(3)
A 		5.5
(2.2)
A 		6
B 1.2
(-2.8)
A 		3.3
(1.3)
A 		4.2
(3)
A 		3.9
(2.4)
A 		1.1
(-3)
A 		1.1
(-3)
A 		3
C 0.7
(-2.8)
A 		1.1
(-2.3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.6
(-1.6)
A 		5.3
(3)
A 		5
avr 0.8
(-3) 		1.8
(-1.1) 		2
(-0.8) 		1.6
(-1.5) 		3
(1.1) 		4
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177828_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8957
Sequence Type Exemplar sequence
Representative Public ID F02H6.4 NCBI
Target Description F02H6.4 /REP_DB=WormBase Gene ID /WP=CE17628 /TR=O62131 /GB=CAB05171.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070327(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070327 NCBI Caenorhabditis elegans F02H6.4 (F02H6.4) mRNA, complete cds. 11/11 None
GENEFINDER00000026631 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14203455:14217890:1 11/11 None
F02H6.4 ENSEMBL cdna:known chromosome:CEL140:IV:14216082:14217527:1 gene:F02H6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026625 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14216087-14217533(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02H6.4
Entrez Gene 184103 Entrez gene
SwissProt O62131 EMBL-EBI
WormBase CE17628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05171 Hypothetical protein F02H6.4 [Caenorhabditis elegans] ref|NP_502728.1| F02H6.4 [Caenorhabditis elegans] 1.0E-128
blast CAB05171 Hypothetical protein F02H6.4 [Caenorhabditis elegans] ref|NP_502728.1| F02H6.4 [Caenorhabditis elegans] 1.0E-117
blast CAA93537 Hypothetical protein W06D11.5 [Caenorhabditis elegans] ref|NP_510055.1| W06D11.5 [Caenorhabditis elegans] 1.0E-27
blast CAB05172 Hypothetical protein F02H6.3a [Caenorhabditis elegans] ref|NP_502726.1| F02H6.3a [Caenorhabditis elegans] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:177828_AT
aactgaaaaatctactccctggtggactacagacgcccagacctacaaagctggaaccta
atccgaagcttgctgctttgttcaaattcttagagatatatcagggctcactcattgaga
aagcattcgaattttctaatgacagagtcaagataattgcttatattccacatgacgtct
cattggaactaaaagaaggcaactatgacaaatcacttgcactgatccgaaccagacgaa
tggctaaaatgatgggtgaactttgggaagaggaaagaaaacttttcgaggaggaaaata
gaaagagagcaggcatgataaaatacgcaaaacgctgtgatgtaaatcgacaaccagttc
aaaaagtcatggaggatattcgtaacatgtactgcgatctgatgtcatgtctatcacgac
gagaagctcttatccgacaggaagaaaaagatcgacaaatgctcttgaaagttggcttca
aaatctgcaatgactggcttccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGAAAAATCTACTCCCTGGTGG 173 143 293 Antisense
TCCCTGGTGGACTACAGACGCCCAG 574 597 308 Antisense
AGACGCCCAGACCTACAAAGCTGGA 661 69 323 Antisense
GAACCTAATCCGAAGCTTGCTGCTT 131 347 346 Antisense
AGCTTGCTGCTTTGTTCAAATTCTT 137 79 359 Antisense
AGATATATCAGGGCTCACTCATTGA 499 65 386 Antisense
GCTTATATTCCACATGACGTCTCAT 632 303 451 Antisense
GACAAATCACTTGCACTGATCCGAA 385 365 499 Antisense
GTACTGCGATCTGATGTCATGTCTA 398 459 681 Antisense
GACGAGAAGCTCTTATCCGACAGGA 298 379 710 Antisense
AAATCTGCAATGACTGGCTTCCGGA 709 117 773 Antisense
Sequence Source Affymetrix Proprietary Database