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[177827_at]

Description T19C4.5 /REP_DB=WormBase Gene ID /WP=CE06469 /TR=Q22571 /GB=CAA99918.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 22      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 379.7
(0.6)
P 		265.5
(-3)
P 		272.6
(-2.8)
P 		457.1
(3)
P 		192
B 455.6
(3)
P 		302
(-1.7)
P 		260.8
(-3)
P 		450.5
(2.8)
P 		195
C 459.2
(3)
P 		378.1
(0.7)
P 		250.7
(-3)
P 		394.4
(1.1)
P 		209
avr 431.5
(2.9) 		315.2
(-1.1) 		261.4
(-3) 		434
(3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 354.3
(0.1)
P 		474.4
(2)
P 		536
(3)
P 		308.9
(-0.6)
P 		259.9
(-1.4)
P 		157.1
(-3)
P 		379
B 492.6
(1.6)
P 		583
(3)
P 		495.6
(1.6)
P 		377.6
(-0.2)
P 		294.2
(-1.5)
P 		201.8
(-3)
P 		381
C 405.1
(-0.2)
P 		565.4
(3)
P 		369.8
(-0.9)
P 		441.3
(0.5)
P 		267
(-2.9)
P 		262.6
(-3)
P 		303
avr 417.3
(0.8) 		540.9
(3) 		467.1
(1.7) 		375.9
(0) 		273.7
(-1.8) 		207.2
(-3) 		334
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 138.3
(3)
P 		57.6
(-3)
P 		71.3
(-2)
P 		66.9
(-2.3)
P 		81
B 145.3
(3)
P 		74.6
(-2)
P 		60.4
(-3)
P 		96
(-0.5)
P 		85
C 152
(3)
P 		108.7
(-0)
P 		87.4
(-1.5)
P 		66.5
(-3)
P 		86
avr 145.2
(3) 		80.3
(-2.4) 		73
(-3) 		76.5
(-2.7) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 65.3
(-1.8)
P 		168.7
(3)
P 		116.7
(0.6)
P 		78.3
(-1.2)
P 		78.4
(-1.2)
P 		38.3
(-3)
P 		130
B 171.4
(1.9)
P 		194.1
(3)
P 		120.3
(-0.7)
P 		100
(-1.8)
P 		119.5
(-0.8)
P 		75.3
(-3)
P 		119
C 150.1
(1.4)
P 		172.5
(3)
P 		94.1
(-2.5)
P 		88.7
(-2.8)
P 		86.4
(-3)
P 		87.9
(-2.9)
P 		86
avr 128.9
(0.3) 		178.4
(3) 		110.4
(-0.7) 		89
(-1.8) 		94.8
(-1.5) 		67.2
(-3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177827_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13871
Sequence Type Exemplar sequence
Representative Public ID T19C4.5 NCBI
Target Description T19C4.5 /REP_DB=WormBase Gene ID /WP=CE06469 /TR=Q22571 /GB=CAA99918.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073438 NCBI Caenorhabditis elegans T19C4.5 (T19C4.5) mRNA, complete cds. 11/11 None
SNAP00000015939 ENSEMBL cdna:SNAP chromosome:CEL140:V:11174809:11176937:1 11/11 None
GENEFINDER00000015948 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11175154:11176937:1 11/11 None
T19C4.5 ENSEMBL cdna:known chromosome:CEL140:V:11175154:11176937:1 gene:T19C4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11175153-11176937(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19C4.5
Entrez Gene 188594 Entrez gene
SwissProt Q22571 EMBL-EBI
WormBase CE06469 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99918 Hypothetical protein T19C4.5 [Caenorhabditis elegans] ref|NP_505839.1| T19C4.5 [Caenorhabditis elegans] 1.0E-158
blast CAE75185 Hypothetical protein CBG23126 [Caenorhabditis briggsae] 1.0E-148
blast CAA99918 Hypothetical protein T19C4.5 [Caenorhabditis elegans] ref|NP_505839.1| T19C4.5 [Caenorhabditis elegans] 1.0E-114
blast CAE75185 Hypothetical protein CBG23126 [Caenorhabditis briggsae] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:177827_AT
tattctccgagattttggtgcgatctacgcgaaatatccaaaacgagtgtctgcacttta
tttcgaacgactcgcaaatagtatgaatgaagcagcggggcagttacaggaaagtgatca
tttagatgttgagaaaactcaaagtcggatggaagatgctgtgacagattcatcaagtac
tgataatacctcaaatatgtgtaattcatgtacatccctttcatctggacagagatatcc
aaaaccattgacaacaagaaattctgaaacacaaatgcagactctgaaagaggagtcatc
attttgttcttcttgtgttagtagtcgacgttgttcacacgaagttgatggtgttaaatc
agtgtgcccaataacttcagaagcctggcttgtactgtctgcttatattgcaaatcaaat
caaatttggctatgaactcgaaaaacttctcatcaatgaaatgagcaaacttggaattga
tacattgccgtgtcaaatgggagattctgctgaaactgaatcagatggtcaagaatcaaa
taatcattctcataatcatcatcatcgttcgacgacgtcttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCTCCGAGATTTTGGTGCGATC 673 663 489 Antisense
GGTGCGATCTACGCGAAATATCCAA 402 501 505 Antisense
AGTGTCTGCACTTTATTTCGAACGA 526 59 534 Antisense
GAAGCAGCGGGGCAGTTACAGGAAA 340 341 577 Antisense
GTAATTCATGTACATCCCTTTCATC 464 461 689 Antisense
GTACATCCCTTTCATCTGGACAGAG 125 461 698 Antisense
AGAGGAGTCATCATTTTGTTCTTCT 331 67 777 Antisense
GTAGTCGACGTTGTTCACACGAAGT 496 453 809 Antisense
GTGTGCCCAATAACTTCAGAAGCCT 632 487 850 Antisense
CCTGGCTTGTACTGTCTGCTTATAT 699 265 872 Antisense
CATCATCGTTCGACGACGTCTTCCA 277 213 1048 Antisense
Sequence Source Affymetrix Proprietary Database