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[177824_at]

Description C15C6.3 /REP_DB=WormBase Gene ID /WP=CE18504 /TR=Q9XVT2 /GB=CAB02729.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 11.1
(-3)
A 		21.7
(3)
A 		12.7
(-2.1)
A 		13.9
(-1.4)
A 		11
B 14.2
(-1.1)
A 		11.3
(-1.7)
A 		32.3
(3)
A 		5.7
(-3)
A 		27
C 37.7
(3)
A 		19.4
(-0.6)
A 		13.6
(-1.8)
A 		7.3
(-3)
A 		30
avr 21
(3) 		17.5
(1.3) 		19.5
(2.3) 		9
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 22.4
(-0.9)
A 		21.8
(-1)
A 		8.2
(-3)
A 		12.9
(-2.3)
A 		16.2
(-1.8)
A 		49.5
(3)
A 		41
B 11.1
(1.5)
A 		8.3
(-0.4)
A 		10
(0.7)
A 		13.5
(3)
A 		10.9
(1.3)
A 		4.2
(-3)
A 		9
C 36
(0.5)
A 		16.1
(-2.7)
A 		16.3
(-2.7)
A 		51.9
(3)
A 		14.3
(-3)
A 		15.6
(-2.8)
A 		38
avr 23.2
(1.8) 		15.4
(-1.4) 		11.5
(-3) 		26.1
(3) 		13.8
(-2.1) 		23.1
(1.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.1
(1.7)
A 		4.7
(3)
A 		3.3
(-0.1)
A 		2
(-3)
A 		3
B 4.5
(0.1)
A 		2.8
(-1.5)
A 		7.5
(3)
A 		1.2
(-3)
A 		6
C 12.5
(3)
A 		5.6
(-0.7)
A 		4.7
(-1.1)
A 		1.2
(-3)
A 		11
avr 7
(3) 		4.4
(0.2) 		5.2
(1) 		1.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.1
(-1.7)
A 		7.7
(0.4)
A 		1.8
(-3)
A 		3.3
(-2.1)
A 		4.9
(-1.2)
A 		12.1
(3)
A 		10
B 3.8
(1.7)
A 		2.8
(-0.4)
A 		2.4
(-1.3)
A 		3.6
(1.3)
A 		4.4
(3)
A 		1.6
(-3)
A 		3
C 13.3
(3)
A 		4.9
(-2.5)
A 		4.2
(-3)
A 		10.4
(1.1)
A 		4.6
(-2.7)
A 		5.2
(-2.3)
A 		9
avr 7.1
(3) 		5.1
(0.2) 		2.8
(-3) 		5.8
(1.2) 		4.6
(-0.5) 		6.3
(1.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.909
Sequence Type Exemplar sequence
Representative Public ID C15C6.3 NCBI
Target Description C15C6.3 /REP_DB=WormBase Gene ID /WP=CE18504 /TR=Q9XVT2 /GB=CAB02729.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060681(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060681 NCBI Caenorhabditis elegans C15C6.3 (C15C6.3) mRNA, complete cds. 11/11 None
SNAP00000035690 ENSEMBL cdna:SNAP chromosome:CEL140:I:12215221:12220328:1 11/11 None
GENEFINDER00000035695 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12215221:12220328:1 11/11 None
C15C6.3 ENSEMBL cdna:known chromosome:CEL140:I:12216492:12220328:1 gene:C15C6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12216422-12220259(+) 98.34 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C6.3
Entrez Gene 182630 Entrez gene
SwissProt Q9XVT2 EMBL-EBI
WormBase CE18504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02729 Hypothetical protein C15C6.3 [Caenorhabditis elegans] ref|NP_493082.1| C15C6.3 [Caenorhabditis elegans] 0.0
blast CAB02729 Hypothetical protein C15C6.3 [Caenorhabditis elegans] ref|NP_493082.1| C15C6.3 [Caenorhabditis elegans] 1.0E-136
blast CAB02729 Hypothetical protein C15C6.3 [Caenorhabditis elegans] ref|NP_493082.1| C15C6.3 [Caenorhabditis elegans] 1.0E-124
blast CAE56214 Hypothetical protein CBG23841 [Caenorhabditis briggsae] 1.0E-46
blast CAE56214 Hypothetical protein CBG23841 [Caenorhabditis briggsae] 5.0E-46
blast CAE56214 Hypothetical protein CBG23841 [Caenorhabditis briggsae] 2.0E-36
Sequence
Target Sequence 
>C. ELEGANS:177824_AT
ggatcccgaaacgaagctcttccggcagggattctcagaattcttcgtttttcagcaaga
atggagcaagtagcagctcaagatctcaaatcaaacgatctcgtcaaagatcggagaccc
caccgatggttccatcggcgaaacgtcggaaggatgatcagaagcagaagcttcgacgtg
gagacactgctggtggacctcagaatattagtgattcctccagctccaaacttccatctc
gctaccgccaaaaacttccaacggagcaagagaaaatcagctccgatgaggatgagccag
cggagccaattgctcaaaaagctgcagctccagtgagcccaaatccagcttcatcgcgct
ccgcatcaccggagccagctcagcaagtcgatgagcttctggaatccgaagaagctgctc
caccaccaccacctccaccgccaccagaaaatgagccggaggaatttccaccaccaccac
cgtcgatttcgattcgggaaacgaagaaacagttgaaaatgcggctgaaatcaatcaata
aaatgctggaaattcaaaaatcctccccgttgctcgagggaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCCCGAAACGAAGCTCTTCCGG 512 511 1019 Antisense
ATGGTTCCATCGGCGAAACGTCGGA 33 49 1144 Antisense
GAAGCTTCGACGTGGAGACACTGCT 623 341 1185 Antisense
AGACACTGCTGGTGGACCTCAGAAT 43 73 1200 Antisense
GAATATTAGTGATTCCTCCAGCTCC 6 327 1221 Antisense
TGAGGATGAGCCAGCGGAGCCAATT 519 567 1305 Antisense
AAAAGCTGCAGCTCCAGTGAGCCCA 268 131 1335 Antisense
TCACCGGAGCCAGCTCAGCAAGTCG 320 625 1384 Antisense
TGAGCCGGAGGAATTTCCACCACCA 41 569 1470 Antisense
CACCACCGTCGATTTCGATTCGGGA 10 203 1493 Antisense
TCCTCCCCGTTGCTCGAGGGAAATT 574 591 1579 Antisense
Sequence Source Affymetrix Proprietary Database